RetrogeneDB ID: | retro_fcat_763 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:74483336..74484207(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNG1 | ||
Ensembl ID: | ENSFCAG00000027366 | ||
Aliases: | None | ||
Description: | cyclin G1 [Source:HGNC Symbol;Acc:1592] |
Percent Identity: | 87.67 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | MIEVLTTTDSQKLLHQLNALLEQESRCQPKVCGLRLIESAHDNGLRMTARLRDFEVKDLLSLTQFFGFDT |
MIEVLTT.DSQKLLHQLNALLEQE.RCQPKVCGLRLI.SAHDNGLRMTARLRDFEVKDL.SLTQFFGFDT | |
Retrocopy | MIEVLTT-DSQKLLHQLNALLEQEWRCQPKVCGLRLIASAHDNGLRMTARLRDFEVKDLPSLTQFFGFDT |
Parental | ETFSLAVNLLDRFLSKMKVQPKHLGCVG-LSCFYLAVKSIEEERNVPLATDLIRISQYRFTVSDLMRMEK |
ET.SLAVNLLDRFLS..KVQ...LG..G.LSCF..A.K.IEEERNVPLATDLIRISQ.RFTVSDLMRMEK | |
Retrocopy | ETLSLAVNLLDRFLSQTKVQT--LGVLG<LSCFCWAIKPIEEERNVPLATDLIRISQHRFTVSDLMRMEK |
Parental | IVLEKVCWKVKATTAFQFLQLYYSLIQENLP-IER-KNSLNFERLEAQLKACHCRIIF-SKAKPSVLALS |
I..EKVCWKVKAT.AFQFLQLYYS..QENLP.IER.KNSLNFERLEAQLKACHCRIIF.SKAKPSVLALS | |
Retrocopy | IASEKVCWKVKATIAFQFLQLYYSFTQENLP<IER<KNSLNFERLEAQLKACHCRIIF<SKAKPSVLALS |
Parental | IIALEIQAQKCVELTEGIECLQTHSKISGRDLTFWQELVSKCLTEY-SSNKCSKPNVQKLKWIVSGRTAR |
IIAL.IQA.KCVELTEGIECL.THSKI.GRDLTFW.E.VSKCLTE..SSNKCS.PNVQKLKWIVSG.TA. | |
Retrocopy | IIALVIQAHKCVELTEGIECL*THSKINGRDLTFW*EFVSKCLTEI<SSNKCSRPNVQKLKWIVSGCTA* |
Parental | QLKHSYYRITHLPTIPEMVP |
QLKHSYYRITHLPTIPEMVP | |
Retrocopy | QLKHSYYRITHLPTIPEMVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 66 .91 RPM |
SRP017611_kidney | 0 .10 RPM | 283 .00 RPM |
SRP017611_liver | 0 .00 RPM | 51 .25 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006607 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000017207 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015341 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000014293 | 1 retrocopy | |
Equus caballus | ENSECAG00000018880 | 1 retrocopy | |
Felis catus | ENSFCAG00000026008 | 1 retrocopy | |
Felis catus | ENSFCAG00000027366 | 1 retrocopy |
retro_fcat_763 ,
|
Myotis lucifugus | ENSMLUG00000001667 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007651 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020326 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002129 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000007639 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000017902 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007465 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008340 | 1 retrocopy |