RetrogeneDB ID: | retro_fcat_777 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:88826252..88826812(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EBAG9 | ||
Ensembl ID: | ENSFCAG00000025490 | ||
Aliases: | None | ||
Description: | estrogen receptor binding site associated, antigen, 9 [Source:HGNC Symbol;Acc:3123] |
Percent Identity: | 72.4 % |
Parental protein coverage: | 88.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ITQFRLFKVCTCLATVFSFLKRLICRSGRGRKLSGDQITLPTTVDYSSVPKQADVEEWTSWDEDAPTSV- |
..QF.L.KVCTC..T.FSFLKRL.C.SG..RKLSGDQITLPT.VDY.SVPKQ.D.EEWTSWDED.PTSV. | |
Retrocopy | LSQFQLLKVCTCPTTLFSFLKRLTCGSGSRRKLSGDQITLPTAVDYLSVPKQTDAEEWTSWDEDTPTSV< |
Parental | KIEGGNG-NVTTQQNALEQLEPDYFKDMTPTIRKT-QKIIIKKREPLNFGIPDGSTGFSSRLAATQDMPF |
....G.G..V.TQQN..E.LEPDYF.DMTPTIRKT...II.K.REPL.FG.PDGSTGFSSRL.ATQ..PF | |
Retrocopy | RLKEGMG<DVMTQQNTVE-LEPDYFQDMTPTIRKT>RIIIKK-REPLHFGLPDGSTGFSSRLTATQYVPF |
Parental | LHQSPELGDLDTWQENTNAWEEEEDAAWQAEEVLRQQKIADREKRAAEQQRK |
..QSPELG.LDTWQENTNAWE.EEDAAWQAEEVLRQ.K.ADRE.......R. | |
Retrocopy | IRQSPELGNLDTWQENTNAWEGEEDAAWQAEEVLRQHKMADRENKGRKWKRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 28 .23 RPM |
SRP017611_kidney | 0 .10 RPM | 39 .26 RPM |
SRP017611_liver | 0 .00 RPM | 15 .16 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006190 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007848 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000001059 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000010177 | 2 retrocopies | |
Equus caballus | ENSECAG00000009719 | 2 retrocopies | |
Felis catus | ENSFCAG00000025490 | 1 retrocopy |
retro_fcat_777 ,
|
Macropus eugenii | ENSMEUG00000014115 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000004795 | 2 retrocopies | |
Mus musculus | ENSMUSG00000022339 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004220 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000006024 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015326 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000001745 | 2 retrocopies |