RetrogeneDB ID: | retro_fcat_790 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:115365700..115365998(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | POLE4 | ||
Ensembl ID: | ENSFCAG00000005983 | ||
Aliases: | None | ||
Description: | polymerase (DNA-directed), epsilon 4, accessory subunit [Source:HGNC Symbol;Acc:18755] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 84.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | EEEGPSGEAAAPPPQAPTSV-PGARLSRLPLARVKALVKADP-DVTLAGQEAIFILARAAELFVETIAKD |
E.EGP.GEA.A.P.QAP.SV..GA.LS..PLA..KA.V.AD..D.TL.GQEAIFILA.A.E..V.T.A.D | |
Retrocopy | EGEGPRGEAEAQP-QAPVSV<AGAHLSGWPLAGMKAMVEADL<DLTLEGQEAIFILAQALETIVVTTAQD |
Parental | AYCCAQQG-KRKTLQRRDLDNAIEAVDE-FAFLEG |
A.CCA.QG.K.KTLQRRDL...IEAVD..FAFLEG | |
Retrocopy | AHCCA*QG>KGKTLQRRDLGHVIEAVDD<FAFLEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .59 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .57 RPM |
SRP017611_liver | 0 .00 RPM | 7 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017073 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017156 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000027003 | 1 retrocopy | |
Felis catus | ENSFCAG00000005983 | 1 retrocopy |
retro_fcat_790 ,
|
Homo sapiens | ENSG00000115350 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004491 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008356 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001111 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012258 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012105 | 1 retrocopy |