RetrogeneDB ID: | retro_fcat_814 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:11655221..11655630(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX10 | ||
Ensembl ID: | ENSFCAG00000010334 | ||
Aliases: | None | ||
Description: | cytochrome c oxidase assembly homolog 10 (yeast) [Source:HGNC Symbol;Acc:2260] |
Percent Identity: | 58.7 % |
Parental protein coverage: | 60.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | AVPGVALLT-WGVNPLTGALGVFNIFLYTCYYDPLRKVLLLGAGLGLASGMAPGL-RWTPAIWSPNTGAF |
AVP.VALLT..GV.PLTG.LGV..IFL.TC...PL..........G...G..P....W..A..S...G.F | |
Retrocopy | AVPEVALLT>EGVDPLTGVLGVLHIFLCTCCCTPLKRISIADTWVGAIVGATPPVVGWPAAT*SLDAGMF |
Parental | LLGGILYSWQFPHFNALSWGLREDYSRGGYCMMSVTHPALCRRVALRHCLALIGLSAAAPVLDVTTWT |
LLGGILYS...PHFN.LSWGL..D.S.G...MMSVTHPAL.R..AL.H.LALI.LS.AAP.LDVTTWT | |
Retrocopy | LLGGILYSCLLPHFNTLSWGLCTDDSQGSH-MMSVTHPALRRCTALCHRLALITLSSAAPILDVTTWT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 5 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .18 RPM |
SRP017611_liver | 0 .00 RPM | 5 .05 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015294 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017899 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004522 | 1 retrocopy | |
Felis catus | ENSFCAG00000010334 | 1 retrocopy |
retro_fcat_814 ,
|
Otolemur garnettii | ENSOGAG00000007457 | 1 retrocopy |