RetrogeneDB ID: | retro_fcat_818 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:22755685..22756238(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5C1 | ||
Ensembl ID: | ENSFCAG00000000196 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 [Source:HGNC Symbol;Acc:833] |
Percent Identity: | 76.22 % |
Parental protein coverage: | 61.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | RRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVY-GVGSLALYEKADIKAPEDKKKHLLIGVSSDRG |
R.LKSIK.IQKITKSMKMV.AA.Y..A..ELKPA.VY..VGSLALYEKADIK..EDKKKHLLI..SSD.G | |
Retrocopy | R*LKSIKSIQKITKSMKMVPAATYTQADKELKPAQVY>EVGSLALYEKADIKVSEDKKKHLLIDMSSD*G |
Parental | LCGAIHSSVAKQMKNEVATLTAAGKEVMLVGIGDKIRGILHRTHSDQFLVSFKEVGRKPPTFGDASVIAL |
.CG.IHSSV.KQMK.EVAT.TAA.KEV.LVGI..KI..ILHRTHSD.F.V.FKEVGRK.P..GDASVIAL | |
Retrocopy | FCGSIHSSVPKQMKTEVATFTAAEKEVTLVGICGKITNILHRTHSDKFVVTFKEVGRKLPVIGDASVIAL |
Parental | ELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTVASAESMS |
ELLNS.YEF.E..IIFN.FRSVISYK.EEK.I.SLD..ASAES.S | |
Retrocopy | ELLNSRYEFGEDYIIFNLFRSVISYKIEEKVILSLDIIASAESTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 90 .67 RPM |
SRP017611_kidney | 0 .00 RPM | 314 .12 RPM |
SRP017611_liver | 0 .00 RPM | 122 .22 RPM |