RetrogeneDB ID: | retro_fcat_826 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:36863453..36864077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000032032 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC2 | ||
Ensembl ID: | ENSFCAG00000025776 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 2 (rho family, small GTP binding protein Rac2) [Source:HGNC Symbol;Acc:9802] |
Percent Identity: | 65.12 % |
Parental protein coverage: | 99.53 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | RSVPRAVTSAASQAPDAMQAIKCVVVGDGAVGKTCLLISYTTNAFPG-EYIPTVFDNYSANVMVDS-KPV |
RS..R.......Q....M.AI..VVVGDGA..K.CLL..YT.NAFPG....P.VF.N.SANVMVD..K.. | |
Retrocopy | RSLRRHPAATPVQ*AAQMHAIEYVVVGDGAAHKPCLLMGYTANAFPG<TIVPSVFENHSANVMVDG<KMG |
Parental | NLGLWDTAGQEDYDRLRPLSYPQTPVVTSFFICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD |
NLGLWDTAGQEDYDRLRPLSYPQT.V.....ICFSLVSPAS.ENV.AKW.PE..HHCP.TPIILVGTKLD | |
Retrocopy | NLGLWDTAGQEDYDRLRPLSYPQTDVL---LICFSLVSPASSENVGAKWYPEMQHHCPNTPIILVGTKLD |
Parental | LRDDKDTIERLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQPTR-PQKR |
LRD..DTIE.LKEKKL..ITY.QGLA.AKE.D..K.LEC....Q..LK.VFD..I.A.LCP.P.R...KR | |
Retrocopy | LRDNEDTIEKLKEKKLTLITYQQGLAMAKETDVGKCLECLVFMQQDLKRVFDKVI*AALCPLPSR<KRKR |
Parental | PCSIL |
.C..L | |
Retrocopy | KCLLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .52 RPM |
SRP017611_liver | 0 .00 RPM | 1 .72 RPM |