RetrogeneDB ID: | retro_fcat_830 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:44060918..44061294(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000003617 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.78 % |
Parental protein coverage: | 92.65 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGT-VALREIRRYQKSTELLIRKLPFQRLVREIAQD |
.ST.GKA.RK..ATKA.RK.APS.GGV.K.HRYRPG...AL.EI.R.QKST.L..RKLPFQ.LVREIAQ. | |
Retrocopy | ESTKGKAQRKPPATKATRKRAPSPGGVPKHHRYRPGN<LALWEISRDQKSTDLRTRKLPFQQLVREIAQG |
Parental | FKTDLRFQSAAIGALQEASEAYLVGLFEDT-NLCAIHAKRVTIMPKDIQLARRIRGER |
FKTDL.FQ.AAIGALQ.ASEAYL.GLFEDT..L.AIHAKRVTIMPKDIQLA..I.GER | |
Retrocopy | FKTDLCFQRAAIGALQKASEAYLMGLFEDT<HLHAIHAKRVTIMPKDIQLAHCI*GER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .81 RPM |
SRP017611_kidney | 0 .00 RPM | 120 .58 RPM |
SRP017611_liver | 0 .00 RPM | 49 .43 RPM |