RetrogeneDB ID: | retro_fcat_840 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:60700457..60701283(+) | ||
Located in intron of: | ENSFCAG00000002880 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB1 | ||
Ensembl ID: | ENSFCAG00000001572 | ||
Aliases: | None | ||
Description: | cyclin B1 [Source:HGNC Symbol;Acc:1579] |
Percent Identity: | 89.57 % |
Parental protein coverage: | 64.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | IGNKVSEQPQAKLPLKKEAKTLAPG-KVIAKKIPKPLDKAPEPVSVPVPEPEPEHEPVKEEKLSPEPILV |
.GNKVSEQPQAKLPLKKEAKTLAPG.K...KK......KAPEPVSVPVP..EPEHEPVKEEKLSPEPILV | |
Retrocopy | LGNKVSEQPQAKLPLKKEAKTLAPG>KLLLKKYQN--FKAPEPVSVPVPQLEPEHEPVKEEKLSPEPILV |
Parental | DTPSPSPMETSGCAPAEEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVRPKYL |
DTPSPSP.E.SGCAPAEEYLCQ..SDVIL.VNDVDAE.GADPNLCSEYVKDIYAYLRQLEEEQAVRPKYL | |
Retrocopy | DTPSPSPVEMSGCAPAEEYLCQSLSDVILTVNDVDAENGADPNLCSEYVKDIYAYLRQLEEEQAVRPKYL |
Parental | LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMY |
LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVS.IDR.MQNNCVPKKM..LVGVTAMFIASKYEEMY | |
Retrocopy | LGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSLIDRLMQNNCVPKKMM*LVGVTAMFIASKYEEMY |
Parental | PPEIGDFAFVTDNTYTKHQIRQMEMKILRSLNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELT |
PPEIG.FAFVTD..YTKHQIRQMEMKILRSL.FGLGRPLPLHFL.RASKIGEV.VEQHTLAKYLMELT | |
Retrocopy | PPEIGNFAFVTDDSYTKHQIRQMEMKILRSLHFGLGRPLPLHFLWRASKIGEVGVEQHTLAKYLMELT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .49 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .86 RPM |
SRP017611_liver | 0 .00 RPM | 6 .17 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Felis catus | ENSFCAG00000000138 | 1 retrocopy | |
Felis catus | ENSFCAG00000001572 | 1 retrocopy |
retro_fcat_840 ,
|
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041431 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018635 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies |