RetrogeneDB ID: | retro_fcat_856 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:101255282..101255736(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000006453 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.34 % |
Parental protein coverage: | 81.18 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | TASHITKDML-PGPYPKTPEERAAAAKKYNMRVEDYQPYPDDGMGYGDYPKLPDRSQQERDPWYDWDHQD |
T.SHI.KDML.PGPYPKTPEE.A.AAKKYNM..E....Y..DGMG...Y.KLPD.SQ.ER..WY..D..D | |
Retrocopy | TVSHIMKDML>PGPYPKTPEELAEAAKKYNMQIEN*KQYLADGMGSDNYQKLPDHSQLERSLWYE*DYLD |
Parental | LRLNWGEPMHWDLDMY-IRNRVDTSPTPVSWNLMCKHLFGFVAFMLFMFWVGETYPTYQPVGPKQYPYNN |
LRLNWG....WDLD....RNRVDTS.T..SWNLMCK.L.GF.AF.L.MFWV.E....YQPV..K.Y...N | |
Retrocopy | LRLNWGGLITWDLDAQ<TRNRVDTSLTLISWNLMCKQLLGFLAFVLLMFWVREYHSIYQPVRSKRYFCTN |
Parental | LYLERGG-DPTKEP |
L.LE..G.D..KEP | |
Retrocopy | LHLELRG>DTIKEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .99 RPM |
SRP017611_kidney | 0 .00 RPM | 70 .70 RPM |
SRP017611_liver | 0 .00 RPM | 21 .94 RPM |