RetrogeneDB ID: | retro_fcat_858 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:101883107..101883849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSFCAG00000031288 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S3a [Source:UniProtKB/Swiss-Prot;Acc:P61246] |
Percent Identity: | 77.34 % |
Parental protein coverage: | 95.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLV-TRTQGTKIASDGLKGRV-FE |
MA.GKN..LTKGG.K.AKKKVVDPFSKKDWYDVKAPAMF.IRNIGKTLV.TRTQGTKI.SDGLKGRV.FE | |
Retrocopy | MAIGKNEHLTKGGRKEAKKKVVDPFSKKDWYDVKAPAMFSIRNIGKTLV>TRTQGTKITSDGLKGRV<FE |
Parental | VSLADLQNDEVAFR-KFKLITEDVQGKNCLTN-FHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLR |
VSL.DLQ...V.FR.KFK.I.EDVQGKNCL....HG..L..........KWQT.IEAHVDVKTTD.YLL. | |
Retrocopy | VSLVDLQ--KVVFR<KFKIIFEDVQGKNCLSS>WHGSYL*QNVL--LGQKWQTLIEAHVDVKTTDVYLLH |
Parental | LFCVGFTKKRNNQIRKTSYAQHQQVRQ-IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIY |
LFC.GFTKK.NNQI.K.SYAQHQQV.Q.I.KKMMEIMT.EVQ.NDLKEVVNKLIPDS.GKDIEK.CQS.Y | |
Retrocopy | LFCIGFTKKCNNQI*KSSYAQHQQVHQ>IQKKMMEIMTWEVQINDLKEVVNKLIPDSFGKDIEKSCQSLY |
Parental | PLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVE |
PL..VFV..VKMLKKP.F.LGK.MELHGEGS.SGK.TGDETG.KVE | |
Retrocopy | PLYAVFVKNVKMLKKPVFDLGKHMELHGEGSGSGKVTGDETGTKVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 108 .69 RPM |
SRP017611_kidney | 0 .00 RPM | 585 .06 RPM |
SRP017611_liver | 0 .00 RPM | 279 .92 RPM |