RetrogeneDB ID:

retro_fcat_860

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B3:105407307..105407645(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFCAG00000025081
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000008417
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_860
ATGTGTTACATTGCCTCTTACCTGCTGACGTCCTCTAGGGCAATGCCTCCCCCCAGTGCCAAGGACATCAAGAAGATTCT
GGACAGCATGGGCATTGAGGCGGATGACGACCTGCTTGACAAGGTCATCTGTGAGTTGACCGGAAAAGCATTGAAGACAT
CATGGCCCAGGGTATTGGCAAGTTGGCCAGTGTGACCGCTGGTGGGGCTGTGGCTATCCGTGCCTCCCCAGGATCTGCAG
CTCCTGCTGCTGGTTCCATCCCAGCTGCATCAGAGGAGAAGAAGGATGAGAAGGAAGAGTTAGAGGAGTTGGACAATGAC
ACGGGATTCGACTTGTTC

ORF - retro_fcat_860 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.04 %
Parental protein coverage: 97.44 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMRYVASYLLAALGGNASPSAKDIKKILDSVGIEADDDRLNKVISELNGK-NIEDVIAQGIGKLASVPAGG
M.Y.ASYLL........PSAKDIKKILDS.GIEADDD.L.KVI.EL.GK..IED..AQGIGKLASV.AGG
RetrocopyMCYIASYLLTSSRAMPPPSAKDIKKILDSMGIEADDDLLDKVICELTGK<SIEDIMAQGIGKLASVTAGG
ParentalAVAVSAAPGSAAPAAGSTPAAAEEKKDEKKEESEESDDDMGFGLF
AVA..A.PGSAAPAAGS.PAA.EEKKDE.KEE.EE.D.D.GF.LF
RetrocopyAVAIRASPGSAAPAAGSIPAASEEKKDE-KEELEELDNDTGFDLF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 51 .76 RPM
SRP017611_kidney 0 .00 RPM 150 .98 RPM
SRP017611_liver 0 .00 RPM 76 .53 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_860 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_860 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 23 parental genes, and 73 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000069351 retrocopy
Bos taurus ENSBTAG000000017772 retrocopies
Canis familiaris ENSCAFG000000095231 retrocopy
Ciona intestinalis ENSCING000000006261 retrocopy
Callithrix jacchus ENSCJAG000000118386 retrocopies
Dasypus novemcinctus ENSDNOG0000001151312 retrocopies
Dipodomys ordii ENSDORG000000164583 retrocopies
Echinops telfairi ENSETEG000000102404 retrocopies
Felis catus ENSFCAG00000008417 1 retrocopy
retro_fcat_860 ,
Homo sapiens ENSG000001776005 retrocopies
Gorilla gorilla ENSGGOG000000107895 retrocopies
Macaca mulatta ENSMMUG000000206272 retrocopies
Mustela putorius furoENSMPUG000000090491 retrocopy
Mus musculus ENSMUSG000000255084 retrocopies
Nomascus leucogenys ENSNLEG000000268605 retrocopies
Otolemur garnettii ENSOGAG000000162962 retrocopies
Petromyzon marinus ENSPMAG000000095761 retrocopy
Pongo abelii ENSPPYG000000028856 retrocopies
Pan troglodytes ENSPTRG000000031375 retrocopies
Rattus norvegicus ENSRNOG000000021163 retrocopies
Sarcophilus harrisii ENSSHAG000000010561 retrocopy
Sus scrofa ENSSSCG000000128421 retrocopy
Tursiops truncatus ENSTTRG000000124501 retrocopy



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