RetrogeneDB ID: | retro_fcat_860 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:105407307..105407645(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000025081 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000008417 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.04 % |
Parental protein coverage: | 97.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MRYVASYLLAALGGNASPSAKDIKKILDSVGIEADDDRLNKVISELNGK-NIEDVIAQGIGKLASVPAGG |
M.Y.ASYLL........PSAKDIKKILDS.GIEADDD.L.KVI.EL.GK..IED..AQGIGKLASV.AGG | |
Retrocopy | MCYIASYLLTSSRAMPPPSAKDIKKILDSMGIEADDDLLDKVICELTGK<SIEDIMAQGIGKLASVTAGG |
Parental | AVAVSAAPGSAAPAAGSTPAAAEEKKDEKKEESEESDDDMGFGLF |
AVA..A.PGSAAPAAGS.PAA.EEKKDE.KEE.EE.D.D.GF.LF | |
Retrocopy | AVAIRASPGSAAPAAGSIPAASEEKKDE-KEELEELDNDTGFDLF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 51 .76 RPM |
SRP017611_kidney | 0 .00 RPM | 150 .98 RPM |
SRP017611_liver | 0 .00 RPM | 76 .53 RPM |