RetrogeneDB ID: | retro_fcat_861 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:110305292..110305619(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000029966 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.59 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | SYSSHEGRTTAGSAASGLQHLLIVAMSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLA |
SYSS.EGR.TAGS..SGLQHLL.V.M.LPLNPK.FLNGLTGKPVMVKLKWGMEYK.YLVS.DGYMNMQLA | |
Retrocopy | SYSSQEGRATAGSVLSGLQHLLVVEMNLPLNPKSFLNGLTGKPVMVKLKWGMEYKSYLVSADGYMNMQLA |
Parental | NTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDGEMRE |
NTEEY.DGA.SGHLGEVLIRC.NVL..RGV.EEEEDGEMRE | |
Retrocopy | NTEEYTDGAMSGHLGEVLIRC-NVL*FRGV-EEEEDGEMRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 7 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .04 RPM |
SRP017611_liver | 0 .00 RPM | 3 .64 RPM |