RetrogeneDB ID: | retro_fcat_87 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:4681177..4681627(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000006240 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSFCAG00000029141 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 58.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
MA.QL..EQ.AEFK.AF..FDKDGDG.I...ELG.VM..LG.NP.EAEL...I..VD.DG.G.I.F.EFL | |
Retrocopy | MAEQLSAEQVAEFKGAFTRFDKDGDGKIDVQELGAVMQALGKNPSEAELKQLIARVDTDGDGHISFDEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
..MA..MK...SE.E.RE.FR.FD.DG.G.IS..EL...M..LGE....EE.D.MI..AD.D.DGQVNYE | |
Retrocopy | AEMAKIMKSSGSEAEMREVFRAFDLDGDGHISVNELKEAMAKLGENPSQEELDAMIQGADVDQDGQVNYE |
Parental | EFVQMMTAK |
EFV.....K | |
Retrocopy | EFVRILSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 912 .21 RPM |
SRP017611_kidney | 0 .21 RPM | 144 .49 RPM |
SRP017611_liver | 0 .00 RPM | 108 .97 RPM |