RetrogeneDB ID: | retro_fcat_888 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:31807086..31807834(-) | ||
Located in intron of: | ENSFCAG00000002872 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA1 | ||
Ensembl ID: | ENSFCAG00000010150 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A1 [Source:HGNC Symbol;Acc:5031] |
Percent Identity: | 86. % |
Parental protein coverage: | 66.76 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA |
.SKSESPKEPEQL.KLF.GGLSFETTDE.LRSHFEQWGTL.DCVVM..PNTK.SRGFGF.TYATVEEVDA | |
Retrocopy | VSKSESPKEPEQLWKLFTGGLSFETTDENLRSHFEQWGTLMDCVVMGGPNTKHSRGFGFITYATVEEVDA |
Parental | AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR |
.MNA.PH.VDGRVVEPK.AVSREDSQRPGAHLTVKKIF.GGI.EDTE.HHLRDYFEQYGKIEVIEIMTD. | |
Retrocopy | GMNAEPHRVDGRVVEPKTAVSREDSQRPGAHLTVKKIFAGGIREDTEGHHLRDYFEQYGKIEVIEIMTD* |
Parental | GSG-KKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGG |
GSG....GFAFVTFDDHDSVDKIV.QKY.TVNGH.CEVRKA.SKQEMA.ASSSQRG.SGSGN.GGG.GGG | |
Retrocopy | GSG>XXXGFAFVTFDDHDSVDKIVVQKYRTVNGHKCEVRKAVSKQEMAGASSSQRG*SGSGNLGGGHGGG |
Parental | FGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGN |
FGGNDN.G.GGN.SGRGGFGGS.GGG.YGGSG.GYNGFGN | |
Retrocopy | FGGNDNSGHGGNMSGRGGFGGS*GGGRYGGSGNGYNGFGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 171 .58 RPM |
SRP017611_kidney | 0 .21 RPM | 293 .92 RPM |
SRP017611_liver | 0 .10 RPM | 187 .83 RPM |