RetrogeneDB ID: | retro_fcat_891 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:43711849..43713374(-) | ||
Located in intron of: | ENSFCAG00000007066 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000000298 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.08 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SRTSGRFSLLASTPASTPASTMSIRVTQKSYKVSSSGPRGFSSLSFTSAPGSRISSALSRVGSGSSFRGG |
SRTSGRFSLLAS.PAST.ASTMSIR.TQKSYKVS.SGP..FSSLSFT.APGSRISSALS.V.SGSSF..G | |
Retrocopy | SRTSGRFSLLASPPASTLASTMSIRATQKSYKVSFSGPWAFSSLSFTHAPGSRISSALSWVESGSSFQRG |
Parental | LGSSMSVVGGYGRPGGMGAITAVSVNQSLLSPLKLEVDPNIQAVRTQEKEQIKTLNNRFASFIDKVRHLE |
LGSSMSVVGGYGRPG.MG.ITAVSVNQSLLSPLKLEVDPNIQAVR.Q.KEQIKTLNNRFASFIDKVRHLE | |
Retrocopy | LGSSMSVVGGYGRPGSMGGITAVSVNQSLLSPLKLEVDPNIQAVRSQGKEQIKTLNNRFASFIDKVRHLE |
Parental | QQNKILETKWNLLQQQKTARSNMDNMFESYINNLRRQLDTLGQEKLKLEVELGNMQGLVEDFKNKYEEEI |
QQNKILETKWNLLQQQKT.RSNMDN.FESYI.NLRRQL.TLGQEKLKLEVELGNMQGLVEDF.NKYEE.I | |
Retrocopy | QQNKILETKWNLLQQQKTSRSNMDNTFESYIDNLRRQLETLGQEKLKLEVELGNMQGLVEDF-NKYEE-I |
Parental | KERADMENEFVLIKKDVDEAYMNKVELESRLEGLTDEINFLRQLYEEEIRELQSQISDTSVVLSMDNSRS |
KERADMENE.VLIKKDVDE..MN.VELESRLEGLTDEINFLRQLYEEEIRELQSQISDT..VLSM..S.S | |
Retrocopy | KERADMENESVLIKKDVDEVHMN*VELESRLEGLTDEINFLRQLYEEEIRELQSQISDTTAVLSMGSSHS |
Parental | LDLDGIIAEVKAQYEEIANRSRAEAETMYQIKYEELQTLAGKHGDDLRRTKTEISEMNRNINRLQAEIEG |
LDLDGIIA.VKAQYEEIAN.S.AEAETMYQIKYE.LQTLA.KHGDDL..TKTEIS.MN.N.N..QAEIEG | |
Retrocopy | LDLDGIIAKVKAQYEEIANSSQAEAETMYQIKYEQLQTLARKHGDDLHLTKTEISKMNQNTN*RQAEIEG |
Parental | LKNQRASLEAAVADAEQRGELAVKDANAKVAELEAALQRAKQDMARQLREYQELMNVKLALDIEIATYRK |
LKNQRASLEA..AD..Q.GELAVKDANAKVAELEAALQRAKQDMAR.L.EYQELMN.KLALDI.I.TY.K | |
Retrocopy | LKNQRASLEATIADTKQLGELAVKDANAKVAELEAALQRAKQDMAR*LQEYQELMNIKLALDIKITTYCK |
Parental | LLEGEESRLESGMQNMSIHTKTSTGYSGGLVSAYGGLMSP-GLSYAMQSGFGSGGSSASSSRVSSSKAVV |
LLEGEESRLESGMQNMSIHTKTSTGY.GGLVSAY.G.MSP.G.S.A.QSGF.SG.SSASS..VSSSKAVV | |
Retrocopy | LLEGEESRLESGMQNMSIHTKTSTGYLGGLVSAYRGHMSP>GVSHAFQSGFSSGQSSASSGHVSSSKAVV |
Parental | VKKIETRDGKLVSESSDVLSK |
VKKIET.DGKLVS.SSDVLSK | |
Retrocopy | VKKIETCDGKLVSQSSDVLSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .21 RPM | 93 .27 RPM |
SRP017611_liver | 0 .40 RPM | 158 .41 RPM |