RetrogeneDB ID: | retro_fcat_897 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:60716918..60717455(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF4 | ||
Ensembl ID: | ENSFCAG00000004051 | ||
Aliases: | None | ||
Description: | ring finger protein 4 [Source:HGNC Symbol;Acc:10067] |
Percent Identity: | 57.69 % |
Parental protein coverage: | 96.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VNSRQAQK-RTR-EAASTPEMALEAEPIELVESAGDEIVDLTCESLEPVVVDLTHNDSVVVSVERRRPRR |
VNSRQ....RT..E...TPEM.LE.E.I.L.ES..DEIVDLTCESLEP.V.DLT..DSVV...ERRRPR. | |
Retrocopy | VNSRQTREFRTAGEGGPTPEMVLETELIDLRES--DEIVDLTCESLEPAVIDLTCHDSVVITEERRRPRG |
Parental | NARRPRQDHADSCVVSSDDEEVSRDRDVYVTTHTPRHAREEAAAGLRPSGTVSCPICMDGYSEIVQNGRL |
N..R..Q.....CVVSSD.E...R.RDVYVT..T...A.EE.A......G...C.ICMDGYSEI....R. | |
Retrocopy | N-KRSLQRQTGNCVVSSDKEGLRRNRDVYVTNRTSHNALEEEALSCTLPGYIRCRICMDGYSEIELSRRH |
Parental | IVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI |
..STECGH.FCS.CL..SLK....CP.C.KKI....YH.IYI | |
Retrocopy | VYSTECGHIFCSCCLCTSLKYSKNCPVCLKKISYHQYHRIYI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 11 .82 RPM |
SRP017611_kidney | 0 .31 RPM | 7 .83 RPM |
SRP017611_liver | 1 .52 RPM | 3 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014366 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014856 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006675 | 2 retrocopies | |
Equus caballus | ENSECAG00000024877 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000001683 | 3 retrocopies | |
Felis catus | ENSFCAG00000004051 | 1 retrocopy |
retro_fcat_897 ,
|
Loxodonta africana | ENSLAFG00000007382 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005969 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000160 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004998 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000004317 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000004528 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025865 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000008690 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000011101 | 2 retrocopies |