RetrogeneDB ID: | retro_fcat_911 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:79044629..79045018(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB1 | ||
Ensembl ID: | ENSFCAG00000031269 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 1 [Source:HGNC Symbol;Acc:9537] |
Percent Identity: | 60.9 % |
Parental protein coverage: | 53.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | HSAAGPLEMRFSP-YAFNGGTVLAIAGEDFSIVASDTRLSEGYSIHTRDSPKCYRLTDKTVIGCSGFHGD |
.....PL...FSP...F.G.T.LA.AGE...IVASDT.LSEG.SIHTR..P.C..LTDK.V..CS.FHGD | |
Retrocopy | YQPSSPLQLCFSP>FTFKGLT*LAVAGEALLIVASDTGLSEGFSIHTRHGPSCNKLTDKAVVECSSFHGD |
Parental | CLTLTKIIEARLKMYKHSNNKTMTT-GAIAAMLSTILYSRRFFPYYVYNII-GGLDEEGKGAV |
C.TL.KII.ARLKMYK..N.K..T..GA.AAM.STILYS..FFPYYVYNII..G....G.G.. | |
Retrocopy | CFTLAKIIKARLKMYKRDNIKARTM<GATAAMPSTILYSGCFFPYYVYNII<QGEEVKGAGSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 55 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 90 .48 RPM |
SRP017611_liver | 0 .00 RPM | 70 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017047 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004116 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020644 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019502 | 1 retrocopy | |
Felis catus | ENSFCAG00000031269 | 1 retrocopy |
retro_fcat_911 ,
|
Gorilla gorilla | ENSGGOG00000022128 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007469 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019919 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007150 | 1 retrocopy | |
Mus musculus | ENSMUSG00000014769 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007973 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000000344 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017191 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006517 | 1 retrocopy |