RetrogeneDB ID: | retro_fcat_921 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:89897186..89898277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSFCAG00000001936 | ||
Aliases: | None | ||
Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
Percent Identity: | 77.66 % |
Parental protein coverage: | 69.13 % |
Number of stop codons detected: | 7 |
Number of frameshifts detected | 2 |
Parental | MSTNENANSPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNN |
MSTN.NANSPAA.LNRFKNKGKDSTEMR...IEVN.ELRKAK.DDQ.LKRRNVSSFPD.ATS.LQEN.NN | |
Retrocopy | MSTNINANSPAACLNRFKNKGKDSTEMRWH*IEVNEELRKAK-DDQLLKRRNVSSFPDGATSLLQENCNN |
Parental | QGTVNWSVDDIVKGINSNN-LESQLQATQAARKLLSREKQPPIDNIIRAG-LIPKFVSFLGRTDCSPIQF |
QGTV.WSVDDIV.GINSN..LES.LQAT.A.RKLLSRE.QPPIDNII.AG.LIPKFV.F.GRTDCSPIQF | |
Retrocopy | QGTVSWSVDDIVQGINSNS>LES*LQATKADRKLLSRETQPPIDNIIWAG>LIPKFVYFMGRTDCSPIQF |
Parental | ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASSHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDP |
..AWALTNI.S.TSEQTK.VVDGG..PAFISLLASSHAHIS.QAV..LG..A.DGSV..DL.IKYG.VD. | |
Retrocopy | *FAWALTNIVSRTSEQTKIVVDGGDTPAFISLLASSHAHIS*QAVGVLGSNADDGSVPQDLFIKYGTVDL |
Parental | LLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYL |
LLAL..V.DM.SL.CGYL.NL.WTLSNLC.NKNP...LDA.EQILPTLV.LL.HDDPEVL..TCWAISYL | |
Retrocopy | LLAL-TVSDM*SLECGYLHNLPWTLSNLCHNKNPECLLDATEQILPTLVHLLNHDDPEVLLHTCWAISYL |
Parental | TDGPNERIEMVVKTGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPK |
TDGPN....MV.K.GVV.QLVKLLGA.EL.IVTP.L.A..NIVTG.DEQTQVVID.G...V.PSLL.N.K | |
Retrocopy | TDGPN*WTKMVMKIGVVLQLVKLLGASELLIVTPVLKATVNIVTGADEQTQVVIDVGVHVVLPSLLMNLK |
Parental | TNIQKEATWTMSNITAG |
TNIQK.A.WT.SNI.AG | |
Retrocopy | TNIQK*AIWTVSNIIAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .04 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .03 RPM |
SRP017611_liver | 0 .00 RPM | 8 .59 RPM |