RetrogeneDB ID: | retro_fcat_924 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:104001151..104001948(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMC1 | ||
Ensembl ID: | ENSFCAG00000011310 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, ATPase, 1 [Source:HGNC Symbol;Acc:9547] |
Percent Identity: | 87.64 % |
Parental protein coverage: | 60.45 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS |
KVEKA.QETYAD.GGLDN.IQEIKESVELPLTHPE.YEEMGIK.PK.VILYGP.GTGKTLL.KAVANQ.S | |
Retrocopy | KVEKASQETYADTGGLDNRIQEIKESVELPLTHPECYEEMGIKLPKRVILYGPHGTGKTLLTKAVANQIS |
Parental | ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN |
AT.LRVVGSELIQKYLGDGPKLVRELF.VAEEHA.SI.FIDEIDAIGTK.YDSN..G.REIQ.TML..LN | |
Retrocopy | ATLLRVVGSELIQKYLGDGPKLVRELFQVAEEHAKSIIFIDEIDAIGTKIYDSNCRGKREIQ*TMLDWLN |
Parental | Q-LDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLADDVTLDDL |
Q...GFDSRGD.KVIMATN.IETLDPALIRPG.ID.KIEFPLP.EKTK.RIFQIHTSRM.LA.DVTLDDL | |
Retrocopy | Q<VEGFDSRGDMKVIMATN*IETLDPALIRPGCIDWKIEFPLPNEKTKKRIFQIHTSRMMLANDVTLDDL |
Parental | IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL |
IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE.VLYKKQEGTP.GLYL | |
Retrocopy | IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKEDVLYKKQEGTPKGLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 34 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 43 .08 RPM |
SRP017611_liver | 0 .00 RPM | 27 .90 RPM |