RetrogeneDB ID: | retro_fcat_930 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:109145051..109145556(-) | ||
Located in intron of: | ENSFCAG00000006821 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000026237 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.61 % |
Parental protein coverage: | 83.82 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | KKQSDVMRFLLRVRCWQYRQLSALH-RAPRPTRPDKARRLG-YKAKQGYVIYRIRVRRGGRKRPVPKGAT |
..QS.VM.FLLRVRCWQY.QLSA.H.R.P.P..PDKA.RLG..K..QGYVIY.IRVR..G.K..VPKGAT | |
Retrocopy | EEQSAVMSFLLRVRCWQYGQLSAVH<RGPHPIQPDKAPRLG<HKT*QGYVIYQIRVRHSGCKHSVPKGAT |
Parental | YGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRR-NPDT- |
.GKP.HHG.N....A.SL.SVA......HCGALRVLNS.WVGEDSTYKFFEV..IDPF..A.RR.NPDT. | |
Retrocopy | *GKPGHHGANRPRLAQSL*SVADVWLD-HCGALRVLNSNWVGEDSTYKFFEVTFIDPFR*ALRR<NPDT< |
Parental | QWITKPVHKHREMRGLTSA-GRKSRGLGKGHKFHHT |
QWI..PVHKHRE...LTS..G....GLGKGHKFHH. | |
Retrocopy | QWIAEPVHKHRET*ELTSE<GHERYGLGKGHKFHHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 545 .97 RPM |
SRP017611_kidney | 0 .10 RPM | 784 .48 RPM |
SRP017611_liver | 0 .20 RPM | 435 .80 RPM |