RetrogeneDB ID: | retro_fcat_944 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:33945925..33946250(+) | ||
Located in intron of: | ENSFCAG00000011108 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BNIP3L | ||
Ensembl ID: | ENSFCAG00000030159 | ||
Aliases: | None | ||
Description: | BCL2/adenovirus E1B 19kDa interacting protein 3-like [Source:HGNC Symbol;Acc:1085] |
Percent Identity: | 56.78 % |
Parental protein coverage: | 52.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MFDVEMHTSRDHSSQSEEEVAEGEKEVDALKKSVDWVSDWSSRPENIPPKE-FHFRHPKRSVSLSMRKSG |
.FDVEMH.SRDHSSQSE..V....KEVDALK.S.D..SD.S.RPE.IP....F.FRH.....S...RK.G | |
Retrocopy | LFDVEMHSSRDHSSQSE--VIKEKKEVDALKESIDCMSD*SCRPETIPLGS*FLFRHSLYLLSMRKRKTG |
Parental | AMKKGGIFSAEFLKVFIPSLFLSHVLALGLGIYIGKR-LSTP-SASTY |
.....G.FS...L..FIPSLFL.HVL.L.LGIY......STP.SA.TY | |
Retrocopy | ---RRGVFSLHTL--FIPSLFLPHVLSLELGIYTENK<MSTP<SARTY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 141 .86 RPM |
SRP017611_kidney | 0 .00 RPM | 89 .04 RPM |
SRP017611_liver | 0 .00 RPM | 28 .31 RPM |