RetrogeneDB ID: | retro_fcat_949 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:35789694..35790042(+) | ||
Located in intron of: | ENSFCAG00000006191 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSFCAG00000013977 | ||
Aliases: | None | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 60.17 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MTKKRRNNGRAKKGRGH-VQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVR-DISEASVFDAYVLPKLY |
MT..RRNN....KG..H.VQ...CT.CA.CVPKD.AIK.F...N..EA.A.R.DISEA.VF....L.KL. | |
Retrocopy | MTMERRNNYHEEKGCQHYVQLVHCTRCA*CVPKD*AIKTFMV*NTAEAIAIR<DISEARVFHTFMLLKL* |
Parental | VKLHYCVSCAIHSKVVRNRSREARKDRTPP-PRFRPAGAAPRPPPKPM |
VKLHYC.SCAI.SKVV.....EA.KD.TPP...FR.AGA.P.P.PKPM | |
Retrocopy | VKLHYCRSCAICSKVVGYDFCEAQKDQTPP>MGFRSAGATPSPLPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 119 .55 RPM |
SRP017611_liver | 0 .00 RPM | 78 .95 RPM |