RetrogeneDB ID:

retro_fcat_959

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B4:47578285..47579544(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ICK
Ensembl ID:ENSFCAG00000005238
Aliases:None
Description:intestinal cell (MAK-like) kinase [Source:HGNC Symbol;Acc:21219]


Retrocopy-Parental alignment summary:






>retro_fcat_959
GAGGAATGCATGAACCTTTAAGAGGTTAAGTCTTCAAAAAAGCTCAACCATGCCAATGTAGTTAAATGGAAAGAAGTTAT
CAGGGAAAATGATCATCTTTATTTTATCTTCGAGGACATGAAGGAGTAGCTTTACCAGCTCATTAAAGAAAGAAATAAGT
GGTTTCCTGAATCAGCTATAAGGAATATCATGTATCAGATATTACAAGGACTTGTGTTTCTTCACAAACATGGCTTCTTC
CAGCAGGACTTAAAGCCTGAGAACTTTCTCTGCACCAGCCCAGAACTTGTGAAAATACAGACTTCAGGTTGGCAGGAGAA
ATCCGATCAAGACCTCCATACACAGACTATGTATCTACCAGAAGGTACAGGGCTCCAGAAGTGCTCCTGAGGTCTACCAG
TTGTGCTCCTCCATTGACATCTGGGCTGTGGGCTGCCTCATGGCAGAAGTGTGCACCCTCAGGCCACTCTTCGCTGGGGC
CAGTGAAATCAACACAATTTTCAAAACTTGCCAACTGTTGGGGACCCGGAAAAAGACCAACGGGCCCGAAGGCTACCAAC
TTCCAAGTGCGATGGACTTCCACTGGCCCCAGAAGGTACCCAATAACTTAAAGACCTTGATTCCAAATGCTAGCGGCAAA
GCCGTTCAACTCCTGAGAGACAAGCTGCAGGGGGATCCCAAGAAACAGCCAACAGCTAAGTCAGGCCCTTCAACAGCCTT
ACTTGCGGACCAGGCATTCACTGGGCTACATCGCATGGAGCCTTCGGGATTCGGGAAAACCACAGAAGGATGTCCTGGAA
AAGGTAGGCCCACCTTCTCACATGAAGCCTGTCCACGCTACCCAGATCCCACCCAAGCCAAGTGCACAGATTTCTTCAAG
GCAGCATCAAGCCCTCCAGCCTTCTTGGCATTTCATGTACCCCCCACAAAGCAGAGGCTCCCAGGCCGGATCACTCGAAC
CACCTTCTGGTGGACAAGCCAAGCCCGTTGCTCTTCCTGTCCCTCCATACCAAGAATCCCCAGTCGAAAATACGAGCTGG
CCTGGAACACAAAAATGGTGAGATCAAGCCAAAGAGTAGGAGAAGGTGGGTCTTGCCTCCTGGTCAACAAAGGAATCTGA
TGACTGGGTTGACTCGGTTGGATGACTTAGATTACAGTCTATCGCTCACCAGGATTGCCCTGAAAAACAGGAAGAGACAG
AGTGAAGAGAGACCCTCTGCAGAACTGAGAGTGGTTTGGACCTGAAGCCCTCTGCGCCC

ORF - retro_fcat_959 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 74.12 %
Parental protein coverage: 66.14 %
Number of stop codons detected: 4
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalEECMNLREVKSLKKLNHANVVKLKEVIRENDHLYFIFEYMKENLYQLIKERNKLFPESAIRNIMYQILQG
EECMNL.EVKS.KKLNHANVVK.KEVIRENDHLYFIFE.MKE.LYQLIKERNK.FPESAIRNIMYQILQG
RetrocopyEECMNL*EVKSSKKLNHANVVKWKEVIRENDHLYFIFEDMKE*LYQLIKERNKWFPESAIRNIMYQILQG
ParentalLAFIHKHGFFHRDLKPENLLCMGPELVKI-ADFGLAREIRSRPPYTDYVSTRWYRAPEVLLRSTNYSSP-
L.F.HKHGFF..DLKPEN.LC..PELVKI..DF.LA.EIRSRPPYTDYVSTR.YRAPEVLLRST....P.
RetrocopyLVFLHKHGFFQQDLKPENFLCTSPELVKI<TDFRLAGEIRSRPPYTDYVSTRRYRAPEVLLRSTSCAPP<
ParentalIDIWAVGCIMAEVYTLRPLFPGASEIDTIFKICQLLGTPKKTDWPEGYQLSSAMNFRWPQCVPNNLKTLI
IDIWAVGC.MAEV.TLRPLF.GASEI.TIFK.CQLLGT.KKT..PEGYQL.SAM.F.WPQ.VPNNLKTLI
RetrocopyIDIWAVGCLMAEVCTLRPLFAGASEINTIFKTCQLLGTRKKTNGPEGYQLPSAMDFHWPQKVPNNLKTLI
ParentalPNASSEAIQLLRDMLQWDPKKRPTA-SQALRYPYFQIGHPLGSTTQSLQDSGKPQKDVLEKAGPPPHIKP
PNAS..A.QLLRD.LQ.DPKK.PTA.SQAL..PY....H.LG....SL.DSGKPQKDVLEK.GPP.H.KP
RetrocopyPNASGKAVQLLRDKLQGDPKKQPTA>SQALQQPYLRTRHSLGYIAWSLRDSGKPQKDVLEKVGPPSHMKP
ParentalIPPAQPPTKPHTRISSRQHQASQPPQHLMY-PYKTEASRTDHLNHLPEDKPSPLLFPSLHTKNPQSKMLA
....Q.P.KP...ISSRQHQA.QP..H.MY.P.K.EA.R.DH.NHL..DKPSPLLF.SLHTKNPQSK..A
RetrocopyVHATQIPPKPSAQISSRQHQALQPSWHFMY>PHKAEAPRPDHSNHLLVDKPSPLLFLSLHTKNPQSKIRA
ParentalGLEHKNGEIKPKSRRRW-GLVSRSTKDSDDWADLDDLDFSPSLSRMDLKNKKRQSE--ETLCRFESVLDL
GLEHKNGEIKPKSRRRW.GL.S.STK.SDDW.D........S....D...K....E..ETLCR.ES.LDL
RetrocopyGLEHKNGEIKPKSRRRW<GLASWSTKESDDWVDSVG*LRLQSIAHQDCPEKQEETE*RETLCRTESGLDL
ParentalKPSEP
KPS.P
RetrocopyKPSAP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 26 .40 RPM
SRP017611_kidney 0 .00 RPM 27 .21 RPM
SRP017611_liver 0 .00 RPM 30 .93 RPM

ChIP-Seq - click to see more details

Felis catus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_fcat_959 retrocopy.

TSS - click to see more details

Felis catus was not studied using FANTOM5 data.

Lab - click to see more details

retro_fcat_959 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Felis catus ENSFCAG00000005238 1 retrocopy
retro_fcat_959 ,


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