RetrogeneDB ID: | retro_fcat_965 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:61350484..61350919(+) | ||
Located in intron of: | ENSFCAG00000028575 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM60A | ||
Ensembl ID: | ENSFCAG00000008955 | ||
Aliases: | None | ||
Description: | family with sequence similarity 60, member A [Source:HGNC Symbol;Acc:30702] |
Percent Identity: | 93.79 % |
Parental protein coverage: | 63.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VVDARAGPSLKTTLKPKKVKTLSGNRIKSNQISKLQKEFKRHNSDAHSTTSSASPAQSPCYSNQSDDGSD |
VVDARAGPSLKT.LKPK.VKTL.GNRIKSNQISKLQKEFK.HNSDAH.TTSSASPAQSPCY.NQSDDGSD | |
Retrocopy | VVDARAGPSLKTALKPKTVKTLTGNRIKSNQISKLQKEFKHHNSDAHGTTSSASPAQSPCYGNQSDDGSD |
Parental | TEMASGSNRTPVFSFLDLTYWKRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPI |
TEMA.GSNR.PVFSFLDLTY.KRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPI | |
Retrocopy | TEMAPGSNRMPVFSFLDLTY*KRQKICCGIIYKGRFGEVLIDTHLFKPCCSNKKAAAEKPEEQGPEPLPI |
Parental | STQEW |
STQEW | |
Retrocopy | STQEW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .80 RPM |
SRP017611_kidney | 0 .10 RPM | 7 .21 RPM |
SRP017611_liver | 0 .00 RPM | 1 .21 RPM |