RetrogeneDB ID: | retro_fcat_969 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:68154679..68155198(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSFCAG00000001199 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634] |
Percent Identity: | 81.5 % |
Parental protein coverage: | 99.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NMARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP |
NMA..N.PAPV.V..KN.RFLI.HNPTNATLNKF.EELKKYG.TTI.RVCEATYDTTL.EKEGIH.LD.P | |
Retrocopy | NMA*VNCPAPVKVICKNLRFLIAHNPTNATLNKFREELKKYGFTTILRVCEATYDTTLREKEGIHILD*P |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRG |
FDDG.PPS.QIVDDWLS..KIKF.EEPGCC.AV.CVAGLGR.PVLV.LALIEG.MKYEDAV..IRQKR.G | |
Retrocopy | FDDGVPPSSQIVDDWLSFAKIKFHEEPGCCMAVRCVAGLGRTPVLVVLALIEGEMKYEDAVHSIRQKRCG |
Parental | AFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCI |
AFNS.QLLYLEKYRPKM.LRFKDS..HRNNC.I | |
Retrocopy | AFNSQQLLYLEKYRPKMQLRFKDSTDHRNNCGI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .25 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .83 RPM |
SRP017611_liver | 0 .00 RPM | 54 .29 RPM |