RetrogeneDB ID: | retro_fcat_975 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:83422866..83423249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GOLGA7 | ||
Ensembl ID: | ENSFCAG00000018740 | ||
Aliases: | None | ||
Description: | golgin A7 [Source:HGNC Symbol;Acc:24876] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 88.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RPQQAPVSGKVFIQRDYSSGTRCQFQTKFPAELE-NRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCL |
.....P.S.K.FIQ......T.CQF..KFP..LE.N.IDRQQFEE.V.TLNNLYAEA.K..GQS.LE.CL | |
Retrocopy | KAEEVPGSWKIFIQWEEQC-TGCQF*NKFPTQLE<NWIDRQQFEEGVQTLNNLYAEAGKFEGQSSLETCL |
Parental | ACLTAYTIFLCMETHYEKVLKKVSKYIQ-EQNEKIYAPQGLLLTDPIERG-LRVI-EITIYE |
A..T.YTIFL.MET.YEKVLK.VSKYI..EQN.K..A.QGLLLTDP.E.G.L.V...I.IYE | |
Retrocopy | APATPYTIFLRMETPYEKVLKIVSKYIK<EQNKKLDASQGLLLTDPTETG>LEVLYQIVIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 14 .84 RPM |
SRP017611_liver | 0 .00 RPM | 12 .64 RPM |