RetrogeneDB ID: | retro_fcat_999 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:134763417..134763944(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSFCAG00000001502 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 59.56 % |
Parental protein coverage: | 90.91 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | GSGRACAEPSFRSSRPPPAPLCLLCTGSSSPATAP-HPLKMYTCAKFVSSPFLVRSTSQLLSRSLSAVAL |
GSGR........SS......LCLL.TGSSS..TAP..PLK....AKFVS..F.V.STSQLLSRSLSAV.L | |
Retrocopy | GSGRILSP---KSSLRSSTSLCLL*TGSSSSSTAP<QPLKTSAGAKFVSTSFSVTSTSQLLSRSLSAVVL |
Parental | KPPETLTDE-SLSSWAAPRPLTSLIPSRGFQTSAASRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLI |
KPP.........S...A...LTSLIPSR.F.TSA..R..DTAAKF.GAGAA..GVAGSGAG.G.V.GS.I | |
Retrocopy | KPPPETLTD>TASASLATHLLTSLIPSRSFRTSAILRAVDTAAKFTGAGAAAAGVAGSGAGTGAVLGSPI |
Parental | IGYARNPSLKQQLFSYAILGFALSEAM-GLFCLMVAFLILFAM |
IGYARN.S.K..LF...I.GFAL..A..GL....V.FL.LFAM | |
Retrocopy | IGYARNRSPK*ELFPSTIPGFALQDAT<GLL*RLVTFL-LFAM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .61 RPM |
SRP017611_kidney | 0 .00 RPM | 114 .91 RPM |
SRP017611_liver | 0 .00 RPM | 59 .54 RPM |