RetrogeneDB ID:

retro_ggor_1103

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:14:46576568..46576862(-)
Located in intron of:ENSGGOG00000008902
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000173674
Ensembl ID:ENSGGOG00000012186
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1103
GTATATAAAGGGGATAGACAAGAGTAGGTAATCAAAATGAAGGAAAATAGATGATTAGAATCAATGTGCTTTGATGGTGT
AAAGAGGTTATGTCATATGAGAGGAAAATTGAGAAAAAAGAGGTGAATAAATACCTCAGACATTATACTGGTTGGTCTGT
GAGACTATTAGGATAACAAATCTGATGTTATTTTAAAATAAAATGCACATGAAGCTAGCAGTCTAAAGGCATATGGCAAG
TTTCTAGAATCTGCTAAAATCAATAAAACCAATATACTTGGTCCTAGAGATGAT

ORF - retro_ggor_1103 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71. %
Parental protein coverage: 69.44 %
Number of stop codons detected: 6
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYN
V.K.D.QE...VIKM..N..LE.MCFDGVKRLCH.RGKLRKK..INTSDIILVGL.DY.DNK.DVILK.N
RetrocopyVYKGDRQE*--VIKMKENR*LESMCFDGVKRLCHMRGKLRKKR*INTSDIILVGL*DY*DNKSDVILK*N
ParentalADEARSLKAYGELPEHAKINETDTFGPGDD
A.EA.SLKAYG...E.AKIN.T...GP.DD
RetrocopyAHEASSLKAYGKFLESAKINKTNILGPRDD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .05 RPM 17 .84 RPM
SRP007412_cerebellum 0 .04 RPM 14 .10 RPM
SRP007412_heart 0 .00 RPM 3 .41 RPM
SRP007412_kidney 0 .04 RPM 15 .74 RPM
SRP007412_liver 0 .00 RPM 12 .00 RPM
SRP007412_testis 0 .00 RPM 14 .40 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1103 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1103 has 5 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1431
Pan troglodytes retro_ptro_978
Pongo abelii retro_pabe_1185
Sus scrofa retro_sscr_948
Equus caballus retro_ecab_634

Parental genes homology:
Parental genes homology involve 12 parental genes, and 17 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000053711 retrocopy
Dipodomys ordii ENSDORG000000115361 retrocopy
Homo sapiens ENSG000001736742 retrocopies
Gorilla gorilla ENSGGOG00000012186 3 retrocopies
retro_ggor_1103 , retro_ggor_363, retro_ggor_968,
Myotis lucifugus ENSMLUG000000129772 retrocopies
Monodelphis domestica ENSMODG000000278201 retrocopy
Mus musculus ENSMUSG000000671941 retrocopy
Otolemur garnettii ENSOGAG000000081821 retrocopy
Pan troglodytes ENSPTRG000000225041 retrocopy
Pteropus vampyrus ENSPVAG000000035212 retrocopies
Rattus norvegicus ENSRNOG000000057361 retrocopy
Sus scrofa ENSSSCG000000298641 retrocopy



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