RetrogeneDB ID: retro_ggor_126

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 11:63426457..63426922(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000023393
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ENSG00000214248
• Ensembl ID: ENSGGOG00000026901
• Aliases: None
• Description: None

Sequence

>retro_ggor_126
CACCATGCCCGGCTAATTGTTTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTGGAACTCCT
GACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTATGAGCCACTGCGCCCAGCCCACAATAT
CTTATTTTCATATTTTTTTGTGTGTTTTGTTTTATTTTTCGAGATGGAGTCTCTCTGTTGCCCAAGCTGGAGTGCAATGG
CGTGATCTTTGCTCACTTCCTGGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCAAGTAACTGGGATTGCAGGCACCCGCC
ATCATGCCCTGTTAAATTTTGTACTTTTGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTTGAACTGCTGACCT
CAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGG

Alignment

ORF - retro_ggor_126 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.83 %
• Parental protein coverage: 72.44 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  HHARLS-FVFLVETRFHHVGQAGLELLTSGDLPASASQSSGITAMSHRAWP-LNFYFLKLAFFFFLETES
          HHARL..FVFLVET.F.HVGQAGLELLTSGD.PASASQS.GIT.MSH.A.P........L...F.....S
Retrocopy HHARLIVFVFLVETGFLHVGQAGLELLTSGDPPASASQSAGITGMSHCAQPTISYFHIFLCVLFYFSRWS

Parental  RSVTQARVQWHDLGSLQPPPPGFK
          .SV.QA.VQW.DL.SL....PGFK
Retrocopy LSVAQAGVQWRDLCSL----PGFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.82 RPM	0.00 RPM
SRP007412_cerebellum	0.75 RPM	0.00 RPM
SRP007412_heart	0.19 RPM	0.00 RPM
SRP007412_kidney	1.10 RPM	0.00 RPM
SRP007412_liver	0.47 RPM	0.00 RPM
SRP007412_testis	0.31 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_126 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_126 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000026901	1 retrocopy	retro_ggor_126 ,