>retro_ggor_1506
GAAACCTCCCTCACTCCCCCCGCAATGCGGCATCCGCTGGTCCTGCTGCTGTTCCTCTCTGCCCTGGTGACCTCCTCCAC
TGCAGCCTCTATCCACGATGCTCATGCCCAAGAGAGCTCCTTGGGTCTTACAGGCCTCCAGAACCTACTCCAAGGCTTCA
GCCGACTTTTCCTGAAAGACGACCTGCTTCGGGGCATAGACAGCTTCTTCTCTACCCCCATGGACTTCCGGGGCCTCCCT
AGGAACTACCAACAAGAGGAGAACCAGGAGCACCAGCTGGGGAACAACACCCTCTCCAGCCACCTCCATATTGACAAGGT
GACCGACAATAAGACAGGAGAGGTGCTGATCTCCGAGAAGGTGGTGGCATCCATCCAGCCGGCGGAGGGGAGTTTCGAGG
GTAACTGGAAGGCACCCAGGATGGAGGAGGCGGCGGCCCTGGTGTCCATCCGGAAGGCTATGGACAGCTTCCACGCAGAG
CTCCAGCCCCGGGTGGCCTTCTGGATCATGAAGCTGCCACGGTGGAGGTCCCACCACAATGTCCTGGAGGGCGGCCTCTG
GCTCAGTGAGAAGCGACACCTCCTGCAGGTCATCCAGGATGGGCTCCACAAGGGGACCCGCGAGGACGTCCTAAAAGAGG
GGACACAGGGCTCCTCCCACTCCGGGCTGTCCCCCGAAAGACCCACTTACTGTACAACCTCAGGCTCTCCTGGCAGCTA
ORF - retro_ggor_1506 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
77.59 % |
Parental protein coverage: |
99.17 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EASPPAPARRHLLVLLLLLSTLVIPSTAAPIHDADAQESSLGLTGLQSLLQGFSRLFLKGNLLRGIDSLF |
| E.S...PA.RH.LVLLL.LS.LV..STAA.IHDA.AQESSLGLTGLQ.LLQGFSRLFLK..LLRGIDS.F |
Retrocopy | ETSLTPPAMRHPLVLLLFLSALVTSSTAASIHDAHAQESSLGLTGLQNLLQGFSRLFLKDDLLRGIDSFF |
|
Parental | SAPMDFRGLPGNYHKEENQEHQLGNNTLSSHLQIDKMTDNKTGEVLISENVVASIQPAEGSFKGDLKVPR |
| S.PMDFRGLP.NY..EENQEHQLGNNTLSSHL.IDK.TDNKTGEVLISE.VVASIQPAEGSF.G..K.PR |
Retrocopy | STPMDFRGLPRNYQQEENQEHQLGNNTLSSHLHIDKVTDNKTGEVLISEKVVASIQPAEGSFEGNWKAPR |
|
Parental | MEEKEALVPIQKAMDSFHTELHPRVAFWIIKLPRRRSHQDALEGGHWLSEKRHRLQAIRDGLRKGTHKGV |
| MEE..ALV.I.KAMDSFH.EL.PRVAFWI.KLPR.RSH...LEGG.WLSEKRH.LQ.I.DGL.KGT...V |
Retrocopy | MEEAAALVSIRKAMDSFHAELQPRVAFWIMKLPRWRSHHNVLEGGLWLSEKRHLLQVIQDGLHKGTREDV |
|
Parental | LEEGTESSSHSRLS-PRKTHLLYILRPSRQL |
| L.EGT..SSHS.LS.PRKTHLLY.LR.S.QL |
Retrocopy | LKEGTQGSSHSGLS<PRKTHLLYNLRLSWQL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
0 .00 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP007412_heart |
0 .00 RPM |
0 .13 RPM |
SRP007412_kidney |
0 .00 RPM |
0 .00 RPM |
SRP007412_liver |
0 .00 RPM |
0 .03 RPM |
SRP007412_testis |
0 .00 RPM |
142 .97 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1506 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_1506 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.