RetrogeneDB ID: retro_ggor_1586

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 22:328882..329077(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000234412
• Ensembl ID: ENSGGOG00000024231
• Aliases: None
• Description: None

Sequence

>retro_ggor_1586
GAATGGAATCATCATCGAATGGACACGAAAGGAGTCATCATCAAATGGAATCACTTGGAATCATCATCGAATGGAATCGA
ATGGAACCATCATCAAATGGAATCTAATGGAATCGTCGAATGGAATTGAATGGAATCATCGAATGGTCTTGAATGGAACC
ATCATCAAATGGAATGGAATGGAATTATCGAATGG

Alignment

ORF - retro_ggor_1586 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.77 %
• Parental protein coverage: 96.43 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EWNGMEWNSK----EWNGIES--NGMEWNG--MEWNGM-EWNGIEW-NGLEWNWNGLEWNG-MEW
          EWN......K.....WN..ES..NG.EWN...ME.NG..EWN..E..NGLEWN....EWNG..EW
Retrocopy EWNHHRMDTKGVIIKWNHLESSSNGIEWNHHQMESNGIVEWN*MESSNGLEWNHHQMEWNGIIEW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1586 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1586 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000024231	2 retrocopies	retro_ggor_1586 , retro_ggor_3074,
Gorilla gorilla	ENSGGOG00000026329	1 retrocopy	retro_ggor_136,