RetrogeneDB ID:

retro_ggor_1605

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:22:3200481..3200748(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSGGOG00000025403
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1605
ACATGGGTCCTGGTGTCCACCTGGAGCCTGATGTTCCCCAGGGGCCTGGGTATCCACTTGGGTCCCGAAGTTCATCTAAG
ACCTAGTGTTCACCTAGGGCCTGATAGTCACCTGGGGACTGGGTATGTACCTGGGGCCTCATGTCCACCTGTGGTGTAGA
TATCTATGTGGGGGCTGTGTGCCAACTTGGTGCCTGATGTCCACCAATGGATCCAGTAAACCCACCTGGGGCTTGGTGTT
TACCTGGAACCTGATGTCCAGCTGGGG

ORF - retro_ggor_1605 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 50.55 %
Parental protein coverage: 58.28 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalSWVLVSSWGLIFTWGLGIHLITGIHQGTSVQLGPDVHLGP-GVNLDRGVNLGPGYLPGAWIFIVDLVSTQ
.WVLVS.W.L.F..GLGIHL....H...SV.LGPD.HLG..G..L...V.L...YL.G.......L.ST.
RetrocopyTWVLVSTWSLMFPRGLGIHLGPEVHLRPSVHLGPDSHLGT>GMYLGPHVHLWCRYLCGGCVPTWCLMSTN
ParentalGLMS-TLGL-GIYLGPDVDLG
G....T.GL.G.YL.PDV.LG
RetrocopyGSSKPTWGL<GVYLEPDVQLG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 0 .62 RPM
SRP007412_cerebellum 0 .00 RPM 1 .22 RPM
SRP007412_heart 0 .00 RPM 0 .16 RPM
SRP007412_kidney 0 .00 RPM 0 .04 RPM
SRP007412_liver 0 .00 RPM 0 .03 RPM
SRP007412_testis 0 .00 RPM 0 .31 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1605 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1605 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Gorilla gorilla ENSGGOG00000025403 2 retrocopies
retro_ggor_1605 , retro_ggor_78,
Pongo abelii ENSPPYG000000200091 retrocopy



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