RetrogeneDB ID: retro_ggor_1605

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 22:3200481..3200748(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000025403
• Aliases: None
• Description: None

Sequence

>retro_ggor_1605
ACATGGGTCCTGGTGTCCACCTGGAGCCTGATGTTCCCCAGGGGCCTGGGTATCCACTTGGGTCCCGAAGTTCATCTAAG
ACCTAGTGTTCACCTAGGGCCTGATAGTCACCTGGGGACTGGGTATGTACCTGGGGCCTCATGTCCACCTGTGGTGTAGA
TATCTATGTGGGGGCTGTGTGCCAACTTGGTGCCTGATGTCCACCAATGGATCCAGTAAACCCACCTGGGGCTTGGTGTT
TACCTGGAACCTGATGTCCAGCTGGGG

Alignment

ORF - retro_ggor_1605 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.55 %
• Parental protein coverage: 58.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SWVLVSSWGLIFTWGLGIHLITGIHQGTSVQLGPDVHLGP-GVNLDRGVNLGPGYLPGAWIFIVDLVSTQ
          .WVLVS.W.L.F..GLGIHL....H...SV.LGPD.HLG..G..L...V.L...YL.G.......L.ST.
Retrocopy TWVLVSTWSLMFPRGLGIHLGPEVHLRPSVHLGPDSHLGT>GMYLGPHVHLWCRYLCGGCVPTWCLMSTN

Parental  GLMS-TLGL-GIYLGPDVDLG
          G....T.GL.G.YL.PDV.LG
Retrocopy GSSKPTWGL<GVYLEPDVQLG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.62 RPM
SRP007412_cerebellum	0.00 RPM	1.22 RPM
SRP007412_heart	0.00 RPM	0.16 RPM
SRP007412_kidney	0.00 RPM	0.04 RPM
SRP007412_liver	0.00 RPM	0.03 RPM
SRP007412_testis	0.00 RPM	0.31 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1605 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1605 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000025403	2 retrocopies	retro_ggor_1605 , retro_ggor_78,
Pongo abelii	ENSPPYG00000020009	1 retrocopy	retro_pabe_3216,