RetrogeneDB ID:

retro_ggor_1704

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:2a:99756171..99756424(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM183A
Ensembl ID:ENSGGOG00000010892
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1704
ATGGTGGGACACCCCAGGGAGAAGGTGATCCAGGATGAGGTCCATCAGAACCAGATCTTGCAGGAGCTGTACCTCAAAGG
GCTACCAGCCCAGAACGTCTATGCGCGGTATCACGTGAACCCCTCCACGAGGTCCACAGATCACCAGGAAGCCCATGTCT
TCGCATGGTAACCTGGAGGAGCCTGGAGAGGCCAGGTTTCGGAATCTCATTCACCACACTGCCCAGGGACCAAGGAAGAG
GGACCCAGACACA

ORF - retro_ggor_1704 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.97 %
Parental protein coverage: 56.67 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAGHPKEKVIPDEVHQNQILRELYLKELRTQKLYTQYHVN-PLRKIH-TVTRKPMSWHDNLEEPADARFL
M.GHP.EKVI.DEVHQNQIL.ELYLK.L..Q..Y..YHVN.PL...H...TRKPMS.H.NLEEP..ARF.
RetrocopyMVGHPREKVIQDEVHQNQILQELYLKGLPAQNVYARYHVN<PLHEVH<QITRKPMSSHGNLEEPGEARFR
ParentalNLIHHAAQGPRKKYPET
NLIHH.AQGPRK..P.T
RetrocopyNLIHHTAQGPRKRDPDT

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .34 RPM 0 .05 RPM
SRP007412_cerebellum 0 .20 RPM 0 .08 RPM
SRP007412_heart 0 .09 RPM 0 .00 RPM
SRP007412_kidney 0 .08 RPM 0 .08 RPM
SRP007412_liver 0 .03 RPM 0 .00 RPM
SRP007412_testis 6 .32 RPM 7 .56 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1704 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1704 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000053391 retrocopy
Callithrix jacchus ENSCJAG000000033151 retrocopy
Homo sapiens ENSG000001869731 retrocopy
Gorilla gorilla ENSGGOG00000010892 2 retrocopies
retro_ggor_1704 , retro_ggor_69,
Nomascus leucogenys ENSNLEG000000132303 retrocopies
Pongo abelii ENSPPYG000000014571 retrocopy
Pan troglodytes ENSPTRG000000006241 retrocopy



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