RetrogeneDB ID: | retro_ggor_1756 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 2b:15138762..15139277(-) | ||
Located in intron of: | ENSGGOG00000000551 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000116649 | ||
Ensembl ID: | ENSGGOG00000014385 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64. % |
Parental protein coverage: | 58.78 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | PAASGPAAIREGWFRETCSLWPG-QALSLQVEQLLHPRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDE |
P...G.AAI.EG.F.E..SL.PG..AL.LQ.EQLLH..RSR.QDILVF.SKT...VLVLDG.I.C..RD. | |
Retrocopy | PGFNGHAAI*EGCFHEIFSLSPG<EALLLQMEQLLHCQRSRSQDILVFHSKTHSSVLVLDGIIPCMDRDK |
Parental | FSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSS |
FSY...I.NLP...HP.P.KVLI.G..DG..L..VVKHPSVESVV......D...VSKKFLPGMAIG.SS | |
Retrocopy | FSY*MRI-NLPFSNHPIPQKVLIVGDKDG-ILHKVVKHPSVESVVR**TEKDGTRVSKKFLPGMAIGFSS |
Parental | SKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPA |
SKLTLH.GD.F.F.KQNQDAF...ITDS.DP..P. | |
Retrocopy | SKLTLHKGDDFDFVKQNQDAFNITITDSWDPLSPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .57 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .00 RPM |
SRP007412_heart | 0 .00 RPM | 7 .88 RPM |
SRP007412_kidney | 0 .08 RPM | 6 .09 RPM |
SRP007412_liver | 0 .00 RPM | 4 .51 RPM |
SRP007412_testis | 0 .00 RPM | 5 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2313 |
Pan troglodytes | retro_ptro_1688 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002354 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000013348 | 1 retrocopy | |
Homo sapiens | ENSG00000116649 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000014385 | 1 retrocopy |
retro_ggor_1756 ,
|
Loxodonta africana | ENSLAFG00000028297 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000007002 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017585 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019321 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016435 | 1 retrocopy | |
Mus musculus | ENSMUSG00000006442 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009532 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000012079 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001892 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000000138 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000027689 | 1 retrocopy |