RetrogeneDB ID: | retro_ggor_1877 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:119868493..119869740(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTOV1 | ||
Ensembl ID: | ENSGGOG00000010182 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.33 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MVRPRRAPYRSGAGGPLGGRGRPPRPLVVRAVRSRSWPASPRGPQPQFSHLPPAPLQEGARVFGALGPIG |
MVRPRRAPYRSG.G.PLGG.GRP.RPL.VRAVRSRSWPASPRGPQ........AP..EGA.VFGALGPIG | |
Retrocopy | MVRPRRAPYRSGVGDPLGGHGRPARPLIVRAVRSRSWPASPRGPQSMQIRACSAPPVEGALVFGALGPIG |
Parental | PSSPGLTLGGLAVSEHRLSNKLLAWSGVLEWQEKRRPYSDSTAKLKRTLPCQAYVNQGENLETDQWPQKL |
PSSPGLTLGGLAVSEHRLSN.LLAWSGVLE.QEKRRPY.DST.KL.RTLPCQAYVNQGENLET.QW.QKL | |
Retrocopy | PSSPGLTLGGLAVSEHRLSNTLLAWSGVLE*QEKRRPYCDSTVKLRRTLPCQAYVNQGENLETNQWQQKL |
Parental | IMQLIPQQLLTTLGPLFRNSQLAQFHFTNRDCDSLKGLCRIMGNGFAGCMLFPHISPCEVRVLMLLYSSK |
IMQLIPQQL.TTL.PLFRNSQLAQFHFTNRDC....GLCRIMGNGFAGC.LFPHISPCE..V.MLLYSSK | |
Retrocopy | IMQLIPQQLMTTLRPLFRNSQLAQFHFTNRDCCLRSGLCRIMGNGFAGCTLFPHISPCEMCVRMLLYSSK |
Parental | KKIFMGLIPYDQSGFVSAIRQVITTRKQAVGPGGVNSGPVQIVNNKFLAWSGVMEWQEPRPEPNSRSKRW |
.KIFMG.IPYDQSGFVSAIRQVITTRKQAVGPG.VNSGPVQIVN.KFLAW.GVMEWQEPRPE..SRSKRW | |
Retrocopy | RKIFMGFIPYDQSGFVSAIRQVITTRKQAVGPGSVNSGPVQIVNKKFLAWRGVMEWQEPRPEAKSRSKRW |
Parental | LPSHVYVNQGEILRTEQWPRKLYMQLIPQQLLTT-LVPLFRNSRLVQFHFTKDLETLKSLCRIMDNGFAG |
LPSHVYVNQGEI.RT.QWPRKL.MQLIPQQLLTT.LV.L.RNSRLVQFHFTKDLETLKSLC.IMDNGFAG | |
Retrocopy | LPSHVYVNQGEIMRTDQWPRKL*MQLIPQQLLTT<LVLLLRNSRLVQFHFTKDLETLKSLCQIMDNGFAG |
Parental | CVHFSYKASCEIRVLMLLYSSEKKIFIGLIPHDQGNFVNGIRRVIANQQQVLQRNLEQEQQQRGMGG |
.VHFSYK..CEIRVLMLLYSSEKKIFIGLI..DQGNF.NGIR.VIANQQQVLQ.NLEQEQQQ.GM.G | |
Retrocopy | *VHFSYKVLCEIRVLMLLYSSEKKIFIGLILRDQGNFLNGIRQVIANQQQVLQWNLEQEQQQQGMEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .10 RPM | 55 .67 RPM |
SRP007412_cerebellum | 0 .00 RPM | 61 .30 RPM |
SRP007412_heart | 0 .00 RPM | 21 .33 RPM |
SRP007412_kidney | 0 .00 RPM | 50 .66 RPM |
SRP007412_liver | 0 .00 RPM | 31 .60 RPM |
SRP007412_testis | 0 .00 RPM | 55 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2694 |
Pan troglodytes | retro_ptro_1818 |
Pongo abelii | retro_pabe_2288 |
Macaca mulatta | retro_mmul_1426 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003495 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004105 | 1 retrocopy | |
Homo sapiens | ENSG00000104960 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010182 | 1 retrocopy |
retro_ggor_1877 ,
|
Macaca mulatta | ENSMMUG00000011618 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005374 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010265 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011321 | 1 retrocopy |