RetrogeneDB ID: | retro_ggor_1996 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 3:171921986..171922787(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KLF7 | ||
Ensembl ID: | ENSGGOG00000009338 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.25 % |
Parental protein coverage: | 89.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | QQTCLELERYLQTEPRRISETFGEDLDCFLHASPPPCIEESFRRLDPLLLPVEAAICEKSSAVDILLSRD |
..TCLELERYLQ.EPRRISETFGEDL.C.LHASPP.CIEESFRRLD.LLLPVEAAIC.KSSAV..LLSR. | |
Retrocopy | EETCLELERYLQKEPRRISETFGEDLACLLHASPPRCIEESFRRLDLLLLPVEAAICQKSSAV--LLSRG |
Parental | KLLSETCLSLQP-ASSSLDSYTAVNQAQLNAVTSLTPPSSPELSRHLVKTSQTLSAVDGTVTLKLVAKKA |
KLLSETCLSLQP.A.SSLDSYTAVNQ.QLN..TSL.PP.SPELS.HLVKTSQTLSAVDGTV.LKLVAKKA | |
Retrocopy | KLLSETCLSLQP<ANSSLDSYTAVNQVQLNTMTSLMPPLSPELSHHLVKTSQTLSAVDGTVMLKLVAKKA |
Parental | ALSSVKVGGVATAAAAVTAAG-AVKSGQSDSDQGGLGAEACPENKKRVHRCQFNGCRKVYTKSSHL-KAH |
AL.SVKVGGV.TA.AAV...G.AVKSGQSDSDQGGLGAEACPENKKRVH.CQFNGC..VYTKSS.L.KAH | |
Retrocopy | ALISVKVGGVTTASAAVMVPG<AVKSGQSDSDQGGLGAEACPENKKRVHCCQFNGCQEVYTKSSPL<KAH |
Parental | QRTHTGEKPYKCSWEGCEWRFARSDELTRHYRKHTGAKPFKCNHCDRCFSRSDHLALHMKRHI |
Q.THTGEKPY..SWEGC.WRFA.SDELTRHY.KHTGA..FKCNHCDRCFSRSDHLA..MK.HI | |
Retrocopy | QKTHTGEKPYRYSWEGC*WRFA*SDELTRHYGKHTGANLFKCNHCDRCFSRSDHLAHPMKKHI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .51 RPM |
SRP007412_heart | 0 .00 RPM | 5 .10 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .81 RPM |
SRP007412_liver | 0 .00 RPM | 7 .20 RPM |
SRP007412_testis | 0 .00 RPM | 15 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2880 |
Pan troglodytes | retro_ptro_1948 |
Pongo abelii | retro_pabe_2384 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000118263 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009338 | 1 retrocopy |
retro_ggor_1996 ,
|
Nomascus leucogenys | ENSNLEG00000007123 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013114 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012850 | 1 retrocopy |