RetrogeneDB ID: | retro_ggor_2134 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 4:158723259..158723906(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSGGOG00000010228 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.78 % |
Parental protein coverage: | 52.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | ENPKNQAPPGLYTKTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGR |
.N.KNQAPPGLY.KTQD.A.APN.PDILEIEFKKGVPVK.TNVKDGTTHQTSLELF.YL..V.GKH.VGR | |
Retrocopy | QNTKNQAPPGLYMKTQDLANAPNAPDILEIEFKKGVPVKMTNVKDGTTHQTSLELFVYLSQVTGKHSVGR |
Parental | IDIVENRFIGMKSRGIYETPAGTILYHAHLDIEAFTMDREVRKIKQ-GLGLKFAELVYTGFWHSPECEFV |
.DIVENR.I.MKSRGI.ETPAGTILYH..LDIEAFTMD.EVRK.KQ.GLGLKFAEL.YTGFWHSPECEF. | |
Retrocopy | TDIVENRCIRMKSRGIHETPAGTILYHTYLDIEAFTMDWEVRKVKQ<GLGLKFAELMYTGFWHSPECEFA |
Parental | RHCIAKSQERVEGKVQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDATGFININSLRLKEYHR |
.HCIAKSQERVEGKVQVSVLKGQVYIL.RESPLSLYN.ELVSMN.QGDYEP.D.TGFININSLRLKEYH. | |
Retrocopy | HHCIAKSQERVEGKVQVSVLKGQVYILSRESPLSLYNKELVSMNIQGDYEPIDSTGFININSLRLKEYH- |
Parental | LQSKVTAK |
LQ.KVTAK | |
Retrocopy | LQRKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 50 .35 RPM |
SRP007412_cerebellum | 0 .04 RPM | 33 .84 RPM |
SRP007412_heart | 0 .03 RPM | 20 .98 RPM |
SRP007412_kidney | 0 .04 RPM | 925 .89 RPM |
SRP007412_liver | 0 .03 RPM | 400 .50 RPM |
SRP007412_testis | 0 .21 RPM | 108 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3109 |
Pan troglodytes | retro_ptro_2101 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies |
retro_ggor_1346, retro_ggor_1675, retro_ggor_2134 , retro_ggor_2403, retro_ggor_2574, retro_ggor_2787, retro_ggor_671, retro_ggor_787,
|
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |