RetrogeneDB ID: | retro_ggor_2172 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:51833411..51833760(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000214788 | ||
Ensembl ID: | ENSGGOG00000016792 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.95 % |
Parental protein coverage: | 96.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MKTILGFKGLFYLHSLIWTCTGDWSAIQVHCTQFWFFARIKPTIFYNLYVNSDEVFLGDGCHVT-HVLPN |
MKTILG..G.F.L.SLIWTC.GDWSAIQV.CTQFWF.ARIKPTIF.NLY.N.DEVFLGDGC.VT..VLPN | |
Retrocopy | MKTILGLNGFFFLNSLIWTCAGDWSAIQVQCTQFWFCARIKPTIFHNLYMNPDEVFLGDGCLVT<LVLPN |
Parental | VYYEFFYHPHDCD-IVTQPLQKVLL-LKTRIKYISRDSTVRSEMPLSCVVHN |
.YYEFFY..H..D..VTQPLQ.V.L.LK.....IS...TVRSEMPLSCVV.N | |
Retrocopy | IYYEFFY--HPHD>VVTQPLQEVRL>LKLKSS-ISQETTVRSEMPLSCVVRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .03 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .41 RPM |