RetrogeneDB ID:

retro_ggor_2280

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:5:93979955..93980621(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ITFG2
Ensembl ID:ENSGGOG00000010482
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2280
GACGGAGATGGGTGTTGTGAGTGGTGGTGGGCTACACAGACTGTGTGGTGTGAGCTTTTCACTGGGAGGAGCTAGGTGAG
GGTCCTGAACATCTGACTGGGCAGCTGGTGTCCCTCAAGAAGTGGTTGCTGGAGGGTCAGTTGGACAGCCTCTCAGTGAC
TCTGGGGCCGCTGGGTGTTCCTGAACTGATGGTGTCTTAGTCAGGCTGTGCTTATGCAATTCTAACGTGTATGTGGAAAA
AGGACACAGGGTCCCCTCCTGCCTCTGAAGGGGTCATGGATGGCAGTAGGGAGACCCTAGCTGCCTGAGATGTGGTACTG
CACCAGACATCAGGCCATATCCACAACAAGAATATCTCCACTCACCTAACTGGCAAAAACAAACAAGGCCATGGCACTGA
GAGTAGTGGCTCTGGCATCTTTGCCGTGAGCACACTGGATGGGATGCTGAAGCTCATGGTGGAAGCAGACAAGCTCTTGT
GGTCAGCACAGGTGTCTCACCAGCCCTTCGCCCTGGAGAAATTGGGATGTCACCGGCAATGGGCATGAGGAGGTAGTTGC
ATGTGCCTGCGATGGACAGACGTATATTATTGATCACAATCGCACCGTCGTCTGCTTCTAAGTGGATGAACATATCTGTG
CCTTCTGTGCAGGCCTGTATGCCTGC

ORF - retro_ggor_2280 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 83.26 %
Parental protein coverage: 50.34 %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalDGDGCRE-LVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLEGQVDSLSVTLGPLGLPELMVSQPG
DGDGC.E..VVGYTD.VV.AF.WEELGEGPEHLTGQLVSLKKW.LEGQ.DSLSVTLGPLG.PELMVS..G
RetrocopyDGDGCCE<VVVGYTDCVV*AFHWEELGEGPEHLTGQLVSLKKWLLEGQLDSLSVTLGPLGVPELMVS*SG
ParentalCAYAILLCTWKKDTGSPPASEGPMDGSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSG
CAYAIL.C.WKKDTGSPPASEG.MDGSRET.AA.DVVLHQTSG.IHNKN.STHL.G..KQGHGTESSGSG
RetrocopyCAYAILTCMWKKDTGSPPASEGVMDGSRETLAA*DVVLHQTSGHIHNKNISTHLTGKNKQGHGTESSGSG
ParentalLFALCTLDGTLKLMEEMEEADKLLWSVQVDHQLFALEKL-DVTGNGHEEVVACAWDGQTYIIDHNRTVVR
.FA..TLDG.LKLM.E...ADKLLWS.QV.HQ.FALEKL.DVTGNGHEEVVACA.DGQTYIIDHNRTVV.
RetrocopyIFAVSTLDGMLKLMVE---ADKLLWSAQVSHQPFALEKL>DVTGNGHEEVVACACDGQTYIIDHNRTVVC
ParentalFQVDENIRAFCAGLYAC
F.VDE.I.AFCAGLYAC
RetrocopyF*VDEHICAFCAGLYAC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 13 .86 RPM
SRP007412_cerebellum 0 .00 RPM 30 .45 RPM
SRP007412_heart 0 .00 RPM 6 .79 RPM
SRP007412_kidney 0 .00 RPM 21 .92 RPM
SRP007412_liver 0 .00 RPM 14 .22 RPM
SRP007412_testis 0 .00 RPM 12 .54 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2280 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2280 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3365
Pongo abelii retro_pabe_2768

Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species Parental gene accession Retrocopies number
Homo sapiens ENSG000001112031 retrocopy
Gorilla gorilla ENSGGOG00000010482 1 retrocopy
retro_ggor_2280 ,
Pongo abelii ENSPPYG000000041501 retrocopy



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