RetrogeneDB ID: | retro_ggor_2335 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:43977500..43977964(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000014430 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V0C | ||
Ensembl ID: | ENSGGOG00000028600 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGL |
MSESK.GPEYASFF.VMGASAAMVFSA..AAYGT.K.G.GI.AMSVMRPELIMKSIIPVV.AGIIAIYGL | |
Retrocopy | MSESKNGPEYASFFVVMGASAAMVFSAPRAAYGTVKTGAGIVAMSVMRPELIMKSIIPVVTAGIIAIYGL |
Parental | VVAVLIANSLNDDISLYKSFLQL-GAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAE |
VV.VLIANS.NDDISLY.S.LQL..AGLSVGLSGLAAGFAI.IVGDAGVR..AQQPRLF.GMILILIF.E | |
Retrocopy | VVTVLIANSPNDDISLYMSCLQL<SAGLSVGLSGLAAGFAIDIVGDAGVRAMAQQPRLFMGMILILIFPE |
Parental | VLGLYGLIVALILSTK |
VLGLY.L.VALILST. | |
Retrocopy | VLGLYCLVVALILSTE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 376 .44 RPM |
SRP007412_cerebellum | 0 .00 RPM | 263 .10 RPM |
SRP007412_heart | 0 .00 RPM | 56 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 138 .16 RPM |
SRP007412_liver | 0 .00 RPM | 45 .26 RPM |
SRP007412_testis | 0 .31 RPM | 42 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3462 |
Pan troglodytes | retro_ptro_2346 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000026428 | 1 retrocopy | |
Homo sapiens | ENSG00000185883 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028600 | 2 retrocopies |
retro_ggor_1323, retro_ggor_2335 ,
|
Macropus eugenii | ENSMEUG00000004597 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026715 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000015439 | 5 retrocopies | |
Mus musculus | ENSMUSG00000024121 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009416 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000015060 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007653 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000006542 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014251 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013420 | 3 retrocopies | |
Drosophila melanogaster | FBgn0262736 | 3 retrocopies | |
Caenorhabditis elegans | R10E11.2 | 2 retrocopies |