RetrogeneDB ID: | retro_ggor_2444 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:80038271..80038617(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AK4 | ||
Ensembl ID: | ENSGGOG00000026644 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.03 % |
Parental protein coverage: | 52.02 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPD-HVITRLMMSE |
AVIL......K.T.C.RIAQN.GL.H.SS.H.LREN.KA.T.VG.MAKQY.EK.LLVPD..VIT.LMM.E | |
Retrocopy | AVILLLLA*DKDTLCKRIAQNLGLRHFSSSHCLRENVKANTGVGDMAKQYTEKGLLVPD<PVITCLMMLE |
Parental | LENRRG-QHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRL |
LEN..G.QH.LLDGFPRTLGQA..LDKICEV.LVI.LNIPFETLKD.L | |
Retrocopy | LENKCG<QHCLLDGFPRTLGQADVLDKICEVNLVIRLNIPFETLKDPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .49 RPM |
SRP007412_cerebellum | 0 .04 RPM | 10 .80 RPM |
SRP007412_heart | 0 .00 RPM | 3 .66 RPM |
SRP007412_kidney | 0 .00 RPM | 116 .82 RPM |
SRP007412_liver | 0 .00 RPM | 10 .79 RPM |
SRP007412_testis | 0 .00 RPM | 9 .32 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000016835 | 1 retrocopy | |
Homo sapiens | ENSG00000162433 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000026644 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000028122 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000009622 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001079 | 3 retrocopies | |
Mus musculus | ENSMUSG00000028527 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015163 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000016024 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000010345 | 17 retrocopies | |
Pongo abelii | ENSPPYG00000001269 | 6 retrocopies | |
Pan troglodytes | ENSPTRG00000000827 | 4 retrocopies |