RetrogeneDB ID: | retro_ggor_2520 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 7:57806987..57807741(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IGF2BP3 | ||
Ensembl ID: | ENSGGOG00000010286 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.08 % |
Parental protein coverage: | 52.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KLLQELTLYNPERTITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGM |
...QELTLYNPE.TITVKGNVE.CAKAEEEIMK.IRESYENDIASM.LQAHLIPGLNLNALGLFPPTSGM | |
Retrocopy | RCFQELTLYNPECTITVKGNVEACAKAEEEIMKQIRESYENDIASMDLQAHLIPGLNLNALGLFPPTSGM |
Parental | PPPTSGPPSAMTPPYPQFEQSETETVHLFIPALSVGAIIGKQGQ-HIKQLSRFAGASIKIAPAEAPDAKV |
PPPTSG.PSAMTP.YPQFEQSETETVHLFI.ALSVG.IIGKQGQ.HIKQLSRFAGASI.IAPAEAPDAKV | |
Retrocopy | PPPTSGQPSAMTPTYPQFEQSETETVHLFIQALSVGVIIGKQGQ>HIKQLSRFAGASINIAPAEAPDAKV |
Parental | RMVIITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV |
RMV.ITGPPEAQFKAQGRIYGK.KEENFVSPKEEVKLEA.I.V.SF.AG.VIGKGGK.VN.LQNL.SAEV | |
Retrocopy | RMVMITGPPEAQFKAQGRIYGKTKEENFVSPKEEVKLEAYITVSSFVAGGVIGKGGKMVNKLQNLPSAEV |
Parental | VVPRDQTPDENDQVVVKITGHFYACQVAQRKIQEILTQVKQH |
VVP.DQTPDENDQVVVKITGHFYACQVAQRKIQ.ILTQVKQH | |
Retrocopy | VVPHDQTPDENDQVVVKITGHFYACQVAQRKIQAILTQVKQH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .53 RPM | 0 .05 RPM |
SRP007412_cerebellum | 0 .08 RPM | 0 .16 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .04 RPM | 0 .08 RPM |
SRP007412_liver | 0 .03 RPM | 0 .45 RPM |
SRP007412_testis | 1 .24 RPM | 1 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000002341 | 1 retrocopy | |
Homo sapiens | ENSG00000136231 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008872 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000010286 | 1 retrocopy |
retro_ggor_2520 ,
|
Gorilla gorilla | ENSGGOG00000015035 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014780 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017730 | 1 retrocopy |