RetrogeneDB ID: retro_ggor_2669

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 8:72231774..72232043(+)
• Located in intron of: ENSGGOG00000007459

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RGS10
• Ensembl ID: ENSGGOG00000008414
• Aliases: None
• Description: None

Sequence

>retro_ggor_2669
TACATCTATGACAGTAATAGTAGTTCTGGCAGCAGCCACCAGAGCCTCAAGAGCACAGCCAAATGGGTGGCTTTCCTGGA
GAATCTGCTGGAAGACCTAGAAGGCATGAAAAGATTAAGGAAATTTTTTAAAAAGATATTCAATGAAGAAAATATTTTGT
TTTGGCTATCATGTAAAGATTTCTTTTTTTAATGCAAGATAAGCAGATGCAAGAAAAGGCAAAGGAGGTCTACATGACGT
TTCTTTCCAGTAAGGCCTCGTCACAAGTC

Alignment

ORF - retro_ggor_2669 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 53.89 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  HIHDSDGSSSSSHQSLKSTAKWAASLENLLEDPEGVKRFREFLKKEFSEENVLFWLACED-FKKMQDKTQ
          .I.DS..SS.SSHQSLKSTAKW.A.LENLLED.EG.KR.R.F.KK.F.EEN.LFWL.C.D.F.......Q
Retrocopy YIYDSNSSSGSSHQSLKSTAKWVAFLENLLEDLEGMKRLRKFFKKIFNEENILFWLSCKD<FLFLMQDKQ

Parental  MQEKAKEIYMTFLSSKASSQV
          MQEKAKE.YMTFLSSKASSQV
Retrocopy MQEKAKEVYMTFLSSKASSQV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	2.69 RPM
SRP007412_cerebellum	0.00 RPM	0.71 RPM
SRP007412_heart	0.00 RPM	0.78 RPM
SRP007412_kidney	0.00 RPM	4.29 RPM
SRP007412_liver	0.03 RPM	1.66 RPM
SRP007412_testis	0.00 RPM	2.18 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_2669 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_2669 has 2 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pongo abelii	retro_pabe_3268
Macaca mulatta	retro_mmul_2295

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000008414	1 retrocopy	retro_ggor_2669 ,
Macaca mulatta	ENSMMUG00000021610	1 retrocopy	retro_mmul_2295,
Nomascus leucogenys	ENSNLEG00000016735	1 retrocopy	retro_nleu_2034,
Procavia capensis	ENSPCAG00000003150	1 retrocopy	retro_pcap_59,
Pongo abelii	ENSPPYG00000002702	1 retrocopy	retro_pabe_3268,