RetrogeneDB ID: | retro_ggor_267 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:94558489..94559251(+) | ||
Located in intron of: | ENSGGOG00000013288 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRKAR1A | ||
Ensembl ID: | ENSGGOG00000016507 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.92 % |
Parental protein coverage: | 66.67 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | ALAKAIEKNVLFSHLDDNERSDIFDAMFSVSFIAGETVIQQGDEGDNFYVIDQGETDVYVNNEWATSVGE |
.LAKAIEKNVL.SHLDDNERSDIFDAMF.VSFI.GETVI.QGDEGDNF.VI.QGE.DV.VN.E.ATSV.E | |
Retrocopy | SLAKAIEKNVLISHLDDNERSDIFDAMFPVSFITGETVILQGDEGDNF*VIEQGERDVCVNDE*ATSVEE |
Parental | GGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLT |
GGSFG...LIYGTPR.ATVKAK.N.K...I.R.S.RRI.MGSTLR..KMYEEFLSKVSILESLDK.E.LT | |
Retrocopy | GGSFGGFVLIYGTPRVATVKAKANMKG*CINRGSCRRIHMGSTLRMWKMYEEFLSKVSILESLDK*EHLT |
Parental | VADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRA |
VAD..EPV.FED.QKIVVQGEPGDEF.IILEG.AA.LQR.SENEEFVEVGRLGPSDYFGE.A.LMN.P.. | |
Retrocopy | VADTWEPVKFEDWQKIVVQGEPGDEFLIILEGPAAMLQRWSENEEFVEVGRLGPSDYFGEFAFLMNHPPD |
Parental | ATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNSFVSLS |
ATVV..GPLK..KLD.PRFE..LGP.SD.LKRNIQQYNSFVSLS | |
Retrocopy | ATVVVHGPLKYIKLDQPRFESALGPGSDLLKRNIQQYNSFVSLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .19 RPM | 413 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 212 .36 RPM |
SRP007412_heart | 0 .06 RPM | 131 .80 RPM |
SRP007412_kidney | 0 .04 RPM | 234 .70 RPM |
SRP007412_liver | 0 .08 RPM | 144 .55 RPM |
SRP007412_testis | 0 .10 RPM | 430 .04 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_172 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000108946 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016507 | 1 retrocopy |
retro_ggor_267 ,
|
Macaca mulatta | ENSMMUG00000002194 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001982 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000009579 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012903 | 1 retrocopy |