RetrogeneDB ID:

retro_ggor_2685

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:8:107310352..107311211(+)
Located in intron of:ENSGGOG00000005382
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NRBF2
Ensembl ID:ENSGGOG00000013016
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_2685
ATGGAAGTAATGAAGGACCCCTCAACCTGGCTCATCAACAGAGCAGATGAGCAGACCGTTTATTAGCTGCAGGCAAATAC
GAAGAGGCTCTTTCTTGTCACAAAAAGGCTGCAGCGTATCTTTCTGAAGCCATGAAGCTGACACAGTCTGAGCAGGCTCA
TCTTTCACTGGAATTGCAAAGGGATAGCCATATGAAACAGCTCCTCCTCATCCAAGAGAGATGGAAAAGGGCCCAGGGTG
AAGCAAGATTGAAAGCCCAGCAGAACACAGACAAGGATGTAGCTGCCCATCTTCAGGCATCTCACAAACCCTCTGTAGAG
GATGCAGAGGGCCAGAGTCCCCTTTCTCAGAAGTACAGCCCTTCCACAGAGAAATGTCTGCCTGAGATTCAGGGGATCTT
TGACAGGGATCCAGACACACTACTATATTTACTTCAGCAAAAGAGTGAGCCAGCAAAGCCATGTATTGGAAGTAAAGCCC
CAAAAGACGATAAAACAATTATAAAGGAGCAGGCAACCAAAATTGCAGATTTGAAGAGGCATATGGAATTCCTTGTGGCA
GAGAATGAAAGATTAAGGGAAGAAAATAACAACTAAAGGCTGAAAAGGCCAGACTTCTAAAAGGTCCAATAGAAAAGGAG
CTGGATGTAGATGCTGACTTTGTAGAAACATCAGAGTTATGGAGCTTGCCACCACATTCAGCAACTGCTACAGCCTCCTC
AACCTGGCAGAAGTTTGCAGCAAATACTGGGAAAGCCAAGGACATTCCTGTCCCCAATCTTCCGCCCTTGGATTTTCCAT
CTACAGAACTTCCTCTTATGGAGCTCTCTGAGGATATTCTGAAAGGATTTATGAATAAT

ORF - retro_ggor_2685 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.46 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMEVM-EGPLNLAHQQSRRADRLLAAGKYEEAISCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLL
MEVM.EGPLNLAHQQSR.ADRLLAAGKYEEA.SCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLL
RetrocopyMEVM<EGPLNLAHQQSR*ADRLLAAGKYEEALSCHKKAAAYLSEAMKLTQSEQAHLSLELQRDSHMKQLL
ParentalLIQERWKRAQREERLKAQQNTDKDVAAHLQTSHKPSAEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPD
LIQERWKRAQ.E.RLKAQQNTDKDVAAHLQ.SHKPS.EDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPD
RetrocopyLIQERWKRAQGEARLKAQQNTDKDVAAHLQASHKPSVEDAEGQSPLSQKYSPSTEKCLPEIQGIFDRDPD
ParentalTLLYLLQQKSEPAEPCIGSKAPKDDKTIIEEQATKIADLKRHVEFLVAENERLRKENK-QLKAEKARLLK
TLLYLLQQKSEPA.PCIGSKAPKDDKTII.EQATKIADLKRH.EFLVAENERLR.EN..QLKAEKARLLK
RetrocopyTLLYLLQQKSEPAKPCIGSKAPKDDKTIIKEQATKIADLKRHMEFLVAENERLREENN<QLKAEKARLLK
ParentalGPIEKELDVDADFVETSELWSLPPHSETATASSTWQKFAANTGKAKDIPIPNLPPLDFPSPELPLMELSE
GPIEKELDVDADFVETSELWSLPPHS.TATASSTWQKFAANTGKAKDIP.PNLPPLDFPS.ELPLMELSE
RetrocopyGPIEKELDVDADFVETSELWSLPPHSATATASSTWQKFAANTGKAKDIPVPNLPPLDFPSTELPLMELSE
ParentalDILKGFMNN
DILKGFMNN
RetrocopyDILKGFMNN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .00 RPM 14 .43 RPM
SRP007412_cerebellum 0 .00 RPM 9 .06 RPM
SRP007412_heart 0 .03 RPM 2 .03 RPM
SRP007412_kidney 0 .04 RPM 8 .34 RPM
SRP007412_liver 0 .00 RPM 15 .22 RPM
SRP007412_testis 0 .00 RPM 13 .88 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2685 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_2685 has 3 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_3999
Pan troglodytes retro_ptro_2715
Pongo abelii retro_pabe_3286

Parental genes homology:
Parental genes homology involve 13 parental genes, and 26 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000046483 retrocopies
Homo sapiens ENSG000001485723 retrocopies
Gorilla gorilla ENSGGOG00000013016 2 retrocopies
retro_ggor_1846, retro_ggor_2685 ,
Macropus eugenii ENSMEUG000000108493 retrocopies
Macaca mulatta ENSMMUG000000177261 retrocopy
Monodelphis domestica ENSMODG000000171831 retrocopy
Mus musculus ENSMUSG000000750002 retrocopies
Otolemur garnettii ENSOGAG000000058561 retrocopy
Pongo abelii ENSPPYG000000024113 retrocopies
Pan troglodytes ENSPTRG000000025393 retrocopies
Rattus norvegicus ENSRNOG000000006412 retrocopies
Sarcophilus harrisii ENSSHAG000000047441 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000113411 retrocopy



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