RetrogeneDB ID: | retro_ggor_2728 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 8:54376598..54377757(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEPT10 | ||
Ensembl ID: | ENSGGOG00000013659 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.96 % |
Parental protein coverage: | 85.02 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ILCVGETGIGKSTLIDTLFNTNFEDYESSHFCPNVKLKAQTYELQESNVQLKLTIVNTVGFGDQINKEES |
I.CVGETGI.KSTL.DTLFNTNFEDYESSHFCPNVKLKAQTYEL.ESNV.LKLTIVNTVGFGDQINKEES | |
Retrocopy | IFCVGETGIRKSTLTDTLFNTNFEDYESSHFCPNVKLKAQTYEL*ESNVRLKLTIVNTVGFGDQINKEES |
Parental | YQPIVDYIDAQFEAYLQEELKIKRSLFTYHDSRIHVCLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIA |
YQPIVDYIDAQFEAYLQE.LKIKRSLFTYHDSRI.VCLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIA | |
Retrocopy | YQPIVDYIDAQFEAYLQE*LKIKRSLFTYHDSRIRVCLYFISPTGHSLKTLDLLTMKNLDSKVNIIPVIA |
Parental | KADTVSKTELQKFKIKLMSELVSNGVQIYQFPTDDDTIAKVNAAMNGQLPFAVVGSMDEVKVGNKMVKAR |
KADTVSKTEL.KFKIK.MSELVSNGVQIYQFPTDDDTIAKVN.AMNGQLPFAVVGSMDEVKVGNKMVKAR | |
Retrocopy | KADTVSKTELHKFKIKFMSELVSNGVQIYQFPTDDDTIAKVNTAMNGQLPFAVVGSMDEVKVGNKMVKAR |
Parental | QYPWGVVQVENENHCDFVKLREMLICTNMEDLREQTHTRHYELYRRCKLEEMGFTDVGPENKPVSLQETY |
QYP.GVVQVENENHCDFVKLREM.ICTNMEDLR.QTHTRHYELYRRCKLEEMGFTDVGPENKPVSLQETY | |
Retrocopy | QYPLGVVQVENENHCDFVKLREMFICTNMEDLR*QTHTRHYELYRRCKLEEMGFTDVGPENKPVSLQETY |
Parental | EAKRHEFHGERQRKEEEMKQMFVQRVKE-KEAILKEAERELQAKFEHLKRLHQEERMKLEEKRRLLEEEI |
EAKRHEFHGERQRKEEEMKQMFVQ.VKE.KEAILKEAERELQAKFEHLKRLH.................I | |
Retrocopy | EAKRHEFHGERQRKEEEMKQMFVQPVKE>KEAILKEAERELQAKFEHLKRLHXXXXXXXXXXXXXXXXXI |
Parental | IAFSKKKATSEIFHSQSFLATGSNLRKDKDRKNSNFL |
IAFSKKKATSEIFHSQSFLATGSNL.KDKD.KNS.FL | |
Retrocopy | IAFSKKKATSEIFHSQSFLATGSNLSKDKDNKNSSFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 5 .85 RPM |
SRP007412_cerebellum | 0 .00 RPM | 4 .18 RPM |
SRP007412_heart | 0 .00 RPM | 5 .57 RPM |
SRP007412_kidney | 0 .04 RPM | 30 .63 RPM |
SRP007412_liver | 0 .05 RPM | 33 .05 RPM |
SRP007412_testis | 8 .60 RPM | 133 .95 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4060 |
Pan troglodytes | retro_ptro_2753 |
Pongo abelii | retro_pabe_3335 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017754 | 3 retrocopies | |
Homo sapiens | ENSG00000186522 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001175 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013659 | 1 retrocopy |
retro_ggor_2728 ,
|
Myotis lucifugus | ENSMLUG00000017273 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001328 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012144 | 1 retrocopy |