RetrogeneDB ID: | retro_ggor_2787 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 9:33569108..33570341(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ASS1 | ||
Ensembl ID: | ENSGGOG00000010228 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | AMSSKGSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQKEDFEEARKKALKLGAKKVFIEDVSREFV |
AMS.KGSVVLAYSG..DTSCILVWLKEQGYD.IAYLAN.GQKEDFEEARKKALKLG.KKVFIED.SREFV | |
Retrocopy | AMSGKGSVVLAYSGSPDTSCILVWLKEQGYDIIAYLANTGQKEDFEEARKKALKLGTKKVFIEDASREFV |
Parental | EEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLAPHI |
EEFIWPAIQSSALYE..YLLGTSLARP.IA.KQVEIAQRE.AK.V.HG.TGKGNDQV.FEL.CY.LAP.I | |
Retrocopy | EEFIWPAIQSSALYENCYLLGTSLARPGIAGKQVEIAQREEAKCVFHGTTGKGNDQVWFELTCYLLAPQI |
Parental | KVIAPWRMPEFYNRFKGRNDLMEYAKQHGIPIPVTPKNPWSMDENLMHISYEAGILENPK-NQAPPGLYT |
KV.APWRMPEFYNRFKG.NDLM...KQH..PIPVTP..P.S.DENLMHISYEAGILE.P..NQ.PPGLYT | |
Retrocopy | KVTAPWRMPEFYNRFKGCNDLMK*EKQHRVPIPVTPQSP*SIDENLMHISYEAGILE-PQ>NQVPPGLYT |
Parental | KTQDPAKAPNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFMYLNEVAGKHGVGRIDIVENRFIGMKS |
KTQDPAKA.NTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELF.YLNEVAGKHGVG.IDIVENRFIGMKS | |
Retrocopy | KTQDPAKALNTPDILEIEFKKGVPVKVTNVKDGTTHQTSLELFVYLNEVAGKHGVGCIDIVENRFIGMKS |
Parental | RGIYETPAGTILYHAHLDIEAFTMDREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCIAKSQERVEGK |
.GI.E.PAGTIL.H.HLDI.AFTM.REVRKIKQGLGLKFAELVYTGFWHSPECEFVRHC.AK..E.VEGK | |
Retrocopy | *GICEAPAGTILHHTHLDIKAFTMYREVRKIKQGLGLKFAELVYTGFWHSPECEFVRHCNAKFRE*VEGK |
Parental | VQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPTDAT-GFININSLRLKEYHRLQSKVTAK |
VQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEP.DAT.GFIN.NSLRLKE.H.LQSKVTAK | |
Retrocopy | VQVSVLKGQVYILGRESPLSLYNEELVSMNVQGDYEPIDAT<GFINVNSLRLKECH-LQSKVTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .29 RPM | 50 .35 RPM |
SRP007412_cerebellum | 1 .26 RPM | 33 .84 RPM |
SRP007412_heart | 0 .16 RPM | 20 .98 RPM |
SRP007412_kidney | 0 .41 RPM | 925 .89 RPM |
SRP007412_liver | 0 .26 RPM | 400 .50 RPM |
SRP007412_testis | 2 .28 RPM | 108 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4149 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000020554 | 3 retrocopies | |
Homo sapiens | ENSG00000130707 | 14 retrocopies | |
Gorilla gorilla | ENSGGOG00000010228 | 8 retrocopies |
retro_ggor_1346, retro_ggor_1675, retro_ggor_2134, retro_ggor_2403, retro_ggor_2574, retro_ggor_2787 , retro_ggor_671, retro_ggor_787,
|
Myotis lucifugus | ENSMLUG00000006066 | 2 retrocopies | |
Mus musculus | ENSMUSG00000076441 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012500 | 13 retrocopies | |
Pongo abelii | ENSPPYG00000019692 | 13 retrocopies | |
Pan troglodytes | ENSPTRG00000021473 | 14 retrocopies |