>retro_ggor_2846
ACAGCCATCATCAAAGAGATCGTTAGCAGAAACGAAAGGAGATATCAAGAGGATGGATTCGACTTAGACTTGACCTATAT
TTATCTAAACATTATTACTATGGGATTTCCTGCAGAAAGACTTGAAGGCGTATACAGGAACAATATTGATGATGTAGTAA
GATTTTTGGATTCAAAGCATAAAAACCACTACAAGATATACAATCTTTGTGCTGAAAGACATTATGACACCGCCAAATTT
AATTGCAGAGTTGCACAATATCCTTTTGAAGACATAACCCACCACAGCTAGAACTTATCAAACCCTTTTGTGAAGATCTT
GACCAATGGCTAAGTGAAGATGACAATCATGTTGCAGCAATTCACTGTAAAGCTGGAAAGGGACGAACTGGTATAATGAT
TTATGCATATTTATTACATCGGGGCAAATTTTTAAAGGCACAAGAGGCCCTAGATTTCTCTGGGGAAGTAAGGACCAGAG
ACAAGAAGGGAGTAACTATTCCCAGTCAGAGGCGCTATGTGTATTATTATAGTTACCTGTTAAAGAATCATCTGGATTAT
AGACCAGTGGCACTGTTGTTTCACAAGATGATGTTTGAAACTATTCCAATGTTCAGTGGCGGAACTTGCAATCCTCAGTT
TGTGGTCTGCCAGCTAAAGGTGAAGATGTATTCCTCCAATTCAGGACCCACACGACGGGAGGACAAGTTCATGTATTTTG
AGTTCCCTCAGCTGTTACCTGTGTGTGGTGATATCAAAGTAGAGTTCTTCCACAAACAGAACAAGATGCTAAAAAAGGAC
AAAATGTTTCACTTTTGGGTAAATATATTCTTCATACCAGGACCAGAGGAAACCTCAGAAAAAGTAGAAAATGGAAGTCT
ATGTGATCAAGAAATTGATAGCATTTGCAGTATAGAGCGTGCAGATAATGACAAGGAGTATCTAGTACTTACTTTAACAA
AAAATGATCTTGATAAAGCAAATAAAGACAAAGCCAACCGACACTTTTCTCCAAATTTTAAGGTGAAGCTGTACTTCACA
AAAACAGTAGAGGAGCCGTCAAATCCAGAGGCTAGCAGTTCAACTTCTGTAACACCAGATGTTAGTGACAATGAACCTGA
TCATTATAGATATTCTGACACCACTGACTCTGATCCAGAGAATGAACCTTTTGATGAAGATCAGCATACACAAATTACAA
AAGTT
ORF - retro_ggor_2846 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.27 % |
Parental protein coverage: |
99.75 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | TAIIKEIVSRNKRRYQEDGFDLDLTYIYPNIIAMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLC |
| TAIIKEIVSRN.RRYQEDGFDLDLTYIY.NII.MGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLC |
Retrocopy | TAIIKEIVSRNERRYQEDGFDLDLTYIYLNIITMGFPAERLEGVYRNNIDDVVRFLDSKHKNHYKIYNLC |
|
Parental | AERHYDTAKFNCRVAQYPFED-HNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMICAYLL |
| AERHYDTAKFNCRVAQYPFED.HNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTG.MI.AYLL |
Retrocopy | AERHYDTAKFNCRVAQYPFED<HNPPQLELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGIMIYAYLL |
|
Parental | HRGKFLKAQEALDFYGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGT |
| HRGKFLKAQEALDF.GEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGT |
Retrocopy | HRGKFLKAQEALDFSGEVRTRDKKGVTIPSQRRYVYYYSYLLKNHLDYRPVALLFHKMMFETIPMFSGGT |
|
Parental | CNPQFVVCQLKVKIYSSNSGPTRREDKFMYFEFPQPLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNTFFI |
| CNPQFVVCQLKVK.YSSNSGPTRREDKFMYFEFPQ.LPVCGDIKVEFFHKQNKMLKKDKMFHFWVN.FFI |
Retrocopy | CNPQFVVCQLKVKMYSSNSGPTRREDKFMYFEFPQLLPVCGDIKVEFFHKQNKMLKKDKMFHFWVNIFFI |
|
Parental | PGPEETSEKVENGSLCDQEIDSICSIERADNDKEYLVLTLTKNDLDKANKDKANRYFSPNFKVKLYFTKT |
| PGPEETSEKVENGSLCDQEIDSICSIERADNDKEYLVLTLTKNDLDKANKDKANR.FSPNFKVKLYFTKT |
Retrocopy | PGPEETSEKVENGSLCDQEIDSICSIERADNDKEYLVLTLTKNDLDKANKDKANRHFSPNFKVKLYFTKT |
|
Parental | VEEPSNPEASSSTSVTPDVSDNEPDHYRYSDTTDSDPENEPFDEDQHTQITKV |
| VEEPSNPEASSSTSVTPDVSDNEPDHYRYSDTTDSDPENEPFDEDQHTQITKV |
Retrocopy | VEEPSNPEASSSTSVTPDVSDNEPDHYRYSDTTDSDPENEPFDEDQHTQITKV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .72 RPM |
16 .16 RPM |
SRP007412_cerebellum |
1 .14 RPM |
17 .37 RPM |
SRP007412_heart |
0 .13 RPM |
2 .66 RPM |
SRP007412_kidney |
0 .29 RPM |
15 .05 RPM |
SRP007412_liver |
0 .11 RPM |
13 .53 RPM |
SRP007412_testis |
0 .83 RPM |
58 .02 RPM |
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_2846 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_ggor_2846 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
7 parental genes, and
8 retrocopies.