RetrogeneDB ID: | retro_ggor_2993 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:40969586..40971130(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IMPDH1 | ||
Ensembl ID: | ENSGGOG00000003963 | ||
Aliases: | None | ||
Description: | Inosine-5'-monophosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:G3QMZ1] |
Percent Identity: | 89.73 % |
Parental protein coverage: | 91.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SMADYLISGGTGYVPEDGLTAQQLFASADGLTYNDFLILPGFIDFIADEVDLTSALTRKITLKTPLISSP |
SMADYLISGG..Y.PEDGLTAQQLFA.AD.LTYNDFLILPGFIDF.A.EVDLTSALTRKITLKTPLIS.P | |
Retrocopy | SMADYLISGGPRYQPEDGLTAQQLFAGADDLTYNDFLILPGFIDFLAGEVDLTSALTRKITLKTPLISFP |
Parental | MDTVTEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKKFEQGFITDPVVLSPSHTVGDVLEAKMRHGF |
.DTV.EADMAIAMALMGGIGFIHHNCTPEFQAN.V.KVKKFEQGFITDPVVLSP.HTVGDVLEAKMRHGF | |
Retrocopy | TDTVIEADMAIAMALMGGIGFIHHNCTPEFQANKVQKVKKFEQGFITDPVVLSPLHTVGDVLEAKMRHGF |
Parental | SGIPITETGTMGSKLVGIVTSRDIDFLAEKDHT-TLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGK |
SGIPITETGT.GSKLVGIVTSRDIDFLAEKDHT.TLLSEVMTPR.ELVVAPAGVT.KEANEILQ.SKKGK | |
Retrocopy | SGIPITETGTIGSKLVGIVTSRDIDFLAEKDHT<TLLSEVMTPRMELVVAPAGVTFKEANEILQHSKKGK |
Parental | LPIVNDRDELVAIIARTDLKKNRDYPLASKDSQKQLLCGAAVGTREDDKYRLDLLTQAGVDVIVLDSSQG |
LP..ND.DELVAIIARTDLKKNRDYPLASKDS.KQLL.GA.VGT.EDDK.RL.LLT.AGVDVIVLDSSQG | |
Retrocopy | LPVINDHDELVAIIARTDLKKNRDYPLASKDSHKQLL*GAVVGTCEDDKFRLGLLTRAGVDVIVLDSSQG |
Parental | NSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVY |
N.VYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLI.AGVDGL.VGMGCGSICIT.EVMACGR..GTAVY | |
Retrocopy | NLVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLINAGVDGLHVGMGCGSICITPEVMACGRTHGTAVY |
Parental | KVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLD |
KVAEYA.RFGVPIIADGGIQT.GHVVKALALGASTVMMGSLLAATTEA.GEYFFSD.V.LKKY.GMGS.D | |
Retrocopy | KVAEYAWRFGVPIIADGGIQTMGHVVKALALGASTVMMGSLLAATTEASGEYFFSDRVPLKKYQGMGSMD |
Parental | AMEKSSSSQKRYFSEGDKVKIAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSMMYSGEL |
AMEKSSSSQK.YFSE.DK.K.AQG.SGSIQDKGSIQKFVPYLIAGIQH.CQDI.ARSL.VLRSMMYSGEL | |
Retrocopy | AMEKSSSSQK*YFSEADKMKFAQGISGSIQDKGSIQKFVPYLIAGIQHSCQDIRARSLAVLRSMMYSGEL |
Parental | KFEKRTMSAQIEGGVHGLHSYEKRLY |
KFEK.T.SAQIEGGV.GLHSYEK.LY | |
Retrocopy | KFEKPTVSAQIEGGVRGLHSYEKWLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 30 .79 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .20 RPM |
SRP007412_heart | 0 .00 RPM | 12 .45 RPM |
SRP007412_kidney | 0 .00 RPM | 10 .79 RPM |
SRP007412_liver | 0 .03 RPM | 6 .25 RPM |
SRP007412_testis | 0 .52 RPM | 21 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4808 |
Pan troglodytes | retro_ptro_3198 |
Pongo abelii | retro_pabe_3736 |
Macaca mulatta | retro_mmul_317 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000017770 | 1 retrocopy | |
Homo sapiens | ENSG00000106348 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003963 | 6 retrocopies |
retro_ggor_1790, retro_ggor_1798, retro_ggor_1827, retro_ggor_2551, retro_ggor_2688, retro_ggor_2993 ,
|
Gorilla gorilla | ENSGGOG00000013245 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016082 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000014509 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000012341 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017976 | 7 retrocopies | |
Pan troglodytes | ENSPTRG00000019660 | 7 retrocopies |