RetrogeneDB ID: | retro_ggor_3 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 22:8680551..8680782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000024213 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000213145 | ||
Ensembl ID: | ENSGGOG00000027381 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.85 % |
Parental protein coverage: | 90.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPKCPKCNKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYAAMFGPKG |
MPKCP.C.K.VYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPY.NHPCYAAMFGPKG | |
Retrocopy | MPKCPACDK-VYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAEHEGKPYGNHPCYAAMFGPKG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .77 RPM | 2 .97 RPM |
SRP007412_cerebellum | 0 .24 RPM | 1 .58 RPM |
SRP007412_heart | 1 .91 RPM | 17 .54 RPM |
SRP007412_kidney | 0 .65 RPM | 6 .38 RPM |
SRP007412_liver | 0 .66 RPM | 5 .80 RPM |
SRP007412_testis | 0 .41 RPM | 1 .76 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2550 |
Pan troglodytes | retro_ptro_43 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000047229 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019788 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001365 | 1 retrocopy | |
Homo sapiens | ENSG00000213145 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026601 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000027381 | 1 retrocopy |
retro_ggor_3 ,
|
Macropus eugenii | ENSMEUG00000001631 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000007158 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006209 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000033768 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014240 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027990 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000000807 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004063 | 1 retrocopy |